RNA id: AMCG00012825


Basic Information

Item Value
RNA id AMCG00012825
length 2970
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00012825
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9013361 ~ 9031350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAACTTTAGGGAAAATAGTTTCATGCTGGTAATTCACAGCGAGCAGCATGTTAGCAGAAAGCTACTGGAAAATTGCATTACTGAGTTATAGCCATACTCATTTTAACTGATGTAATACGATGAAGAATAAGATTTGAGAAAATGACACTGTTGTTTTCAATATGAGATTTCATATGCCGTAGAAATGGGCAATTCGGTTCGCAGAGGCAAAGCGGTGTTTATGGACAGAGCCAGAGTCAAAAGTGTGATGCAGGTGATAGAGCTTTTCAGATCAATTGGAGTTCCTTATGCATCTGTGGATCTAGATAAGAGAGAAGACAAGCATGAGATCCGGCAAGGGCTTTGGCAACTTACTCAACAGAGGGAACTGCCCAGTGTGTTTGTCAACAAGAAACACATAGGAGATTGGGAGAAAACTGCACAGGCCCACAGAGAAGGAAAGCTGCAGGCCCTTCTTGACATGAGCGAGGTGAATCCTACCCCTGACTTCTACGACTATGATCTGCTGGTCATTGGAGGAGGATCGGGCGGACTTGCAGCTGCCAAGGAAGCTGCAGGCTATGGGAAAAAAGTTCTTGTCCTAGACTATGTGACTCCTACTCCCAAGGGAACAAGATGGGGCCTCGGAGGTACATGTGTCAACGTGGGCTGTATCCCCAAAAAACTGATGCATCAGGCGGCCCTTTTAGGACAAGCACTACGCGAGTCAAGGAAGTATGGCTGGGAGTTTAAGGAGAAAGTTACACACAACTGGGGTCTCCTGAGACAGGCGGTGCAGAAACACGTCAGCTCTTTGAGCTTCAGTTACCGCCAGGCTCTGATGGACACCAATGTCACCTACCTGGATGCCTTTGGGGAGCTGGTTGGCCCTCACACTGTCAAGACGAAAACCAGTCAAGGGAAGGAGACATATCACACAGCGGCTGTCTTTATCATTGCCACAGGAGAGAGGCCAAGATACTTAGGATTACCAGGCGACAAGGAGTATTGTATTACCAGTGATGACCTGTTCTCCCTGCCTCACTGTCCTGGCCGCACACTGGTGGTAGGGGCCTCCTATGTGGCTCTGGAGTGCGCTGGCTTCCTGGGGGGCTGGGCCTCGACGGGCTTCGACCAGAAGATGGCCAAGAAGGTCGAGCAGGACATGGACCTGCATGGGGTCAACTTCCTCCACCACTTTGTACCCACAAAGATCCAACAGATGGAGGAGGGCAGTCCTGGGACACTGAAGGTGACCGCCATGTCCACGGATGGGACAGAGACCATCGAGGAACAGTATAATACCGTGTTGTTGGCAATAGGGAGGGATGGTTGCACCCGTAATATTGGCCTCGAATCTGTAGGAGTGAAGTTCAATGAGAGGACAGGGAAGGTCCCCGTCAATGAAGAAGAGCAGACAAACGTGCCGCACATCTACGCCATCGGGGATGTGCTGGAGGGTCGACTAGAGCTCACCCCTGTGGCCATCCAGGCTGGCCGGCTCCTGGCACGGAGGCTGTATGGGCGGCAGAGCACCAAGTGTGATTACACCAATGTCCCCACAACCATCTTCACTACGATGGAGTACGGGGCTTGTGGATTGTCTGAGGAGAGGGCCAGCGAGAAGTATGGAGAAGACAACATAGAGGTTTACCACAGTTATTTCTGGCCTTTGGAATGGACAGTGCCAGCCAGGGACAAAAACTCCTGCTATGCAAAGATCATCTGTCACACAGAAGATAATGATCGGGTTGTGGGTCTCCACATCCTGGGCCCCCATGCAGGAGAGATCACCCAGGGCTTTGCAGCTGCAATGAAGTGTGGGCTGACCAAGCAACAGCTGGACAGCACCATTGGCATCCATCCGGTGTGCGCTGAGGTGTTTACCACCCTGACGAAACGCACTGCAGAGGTGTTGAGGATGGGTGGCTGCTGAGGGTAACCCCCCGTGCTGTTGTCCTCTGTTGTCTCCTATATGGTGAACTTTGGCCATCATTGCCATGCACCATGCTTCCTTTAGGTAGTCTACAGGGTCCAGTTAATTTATCCCACAGCACATTTTCCTTATACACTcgataaaaaacaatacatccaaaaagaaaaccaagatAAATATTGACTGTATTCGCAATCTAGTGTTACACTGCTGGGCATGAGTGGTAAAATACAGTGGCTCAGATCTGTATTGGATTAATCCACAATGCTTGAAGAAATGAAGGAATCCAATTTACCTGGCAAGAGAGGAGAGGGATTCTTCACATGACTGCATTGTGAGGGTTTATCTCTCACCAGGGGAACCAGCTTGCATTTGTTGCTCTGGCAgtgctgattaatcaatacaGGATTCTCGCAGCTTTTCTCCCATTCCAAACAACCATCACCTCAGTCACCGTCGCTCTATAAACCCATATTAACCTATAAACCTATATTAACGTaaccatacatatatattaatcttcTGATTGGATTTTGTGGTGGACCCTTTATCGATTAACCATCATATCTGTTTAAAAAGCTGGACAACAGCAGGcataaatcattttttcaaaGAATATACCTATAAATGAACAAAATTCTTTGGCTGTTTTTGTGCAGCCATACTAAGCTCTAAAAGCCTAAAACTACCTTCAGTCTCTATATCGGTTGATGGGGCTAAGTGGGGCTTGGATTGATGGGTGTGAGTTACCGTAACAACAGGTACCAACAGCACGGATGTCCCTGTTTGAGAGGCCAAGTGCAGAGAGCCTGGCAGCAGGACAGGTGTATGCTGCTCCAATGATGTCTTAGCCTGAAGCCACACTAACAGGTGGGCTGGGACTGATGCGCTGACGCCGTGGCATAGAAACActtggatttgtgttttttttttttttttctaaaacaaatgtgagGCTCCTAAATGATTCGCTCCAGCAATCATGAGTGAAGGCctattgcaatatatatatatatatatatacactcacctaaaggattattaggaacacct

Function

GO:

id name namespace
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49886 lncRNA downstream 111880 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 346337 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 443472 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 744140 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 1117635 7891577 ~ 7895726 (-) False AMCG00012782
TU49922 lncRNA upstream 52310 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 205550 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 655460 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1194344 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1518307 10549657 ~ 10551377 (-) True G40266
AMCG00012827 mRNA downstream 45749 8915063 ~ 8967612 (-) True AMCG00012827
AMCG00012823 mRNA downstream 105698 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012821 mRNA downstream 163869 8846584 ~ 8849492 (-) True AMCG00012821
AMCG00012812 mRNA downstream 192205 8802882 ~ 8821156 (-) True AMCG00012812
AMCG00012814 mRNA downstream 265801 8738170 ~ 8747560 (-) True AMCG00012814
AMCG00012822 mRNA upstream 20227 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012824 mRNA upstream 46538 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012826 mRNA upstream 55668 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012829 mRNA upstream 81649 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012830 mRNA upstream 121206 9152556 ~ 9170975 (-) True AMCG00012830
TU49217 other downstream 2557183 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6829198 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7236140 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8473770 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 81091 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3209046 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4083543 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8848875 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8922713 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile