RNA id: AMCG00012827


Basic Information

Item Value
RNA id AMCG00012827
length 567
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00012827
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8915063 ~ 8967612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATGTGTGAGTGCTGGAGCTCTGGACCACAGCTGGGTCTGCTTCACTGAGCTGGCTAATATCCTCTGCACAGagATATTGTCAGAGCACAGAGACGTAATGCGTAGGAACCCATTTGCTGGGGATGTGTGCTGCCGGAAAGGCTCCCGAAACGCTCTACAGGAACTGTACAACCCCACACAGAGACTGTTTGATTATCTCAGCTACAGCTCTGTGCTGAAAGCTGTCAAAAGGCCTCTGCTAAAAGTGCACTTAAAAGCCCCCAGCCAGCCGTCCGTCCAGTTCCCCGTCTCCACAGCCTCTTTGGCGCCAGCTGAAGGAAATGCCTGCTACCTGGGATCACTTTTCAAGGGCATCTTCAAAATCCTGCTCTGCCTCAAACGGCCCTTCGGTTGTGGGGCCACATGGTACCTGGGATTCAGAAAGGAGAAGCAGAAACCGGTAGAAGAACAATTCCTGAGGGAAGCTAGACGGTTTCAGGAGATTCCCATATTCTCACAGTCATATAAACCGCACATCTCAGAGGTGGCGTACCGGGACACGGCATCATCATTAATATGTTAG

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0047756 chondroitin 4-sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49886 lncRNA downstream 13582 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 248039 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 345174 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 645842 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 1019337 7891577 ~ 7895726 (-) False AMCG00012782
TU49922 lncRNA upstream 116048 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 269288 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 719198 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1258082 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1582045 10549657 ~ 10551377 (-) True G40266
AMCG00012823 mRNA downstream 7400 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012821 mRNA downstream 65571 8846584 ~ 8849492 (-) True AMCG00012821
AMCG00012812 mRNA downstream 93907 8802882 ~ 8821156 (-) True AMCG00012812
AMCG00012814 mRNA downstream 167503 8738170 ~ 8747560 (-) True AMCG00012814
AMCG00012813 mRNA downstream 233464 8667317 ~ 8681599 (-) True AMCG00012813
AMCG00012825 mRNA upstream 45749 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012822 mRNA upstream 83965 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012824 mRNA upstream 110276 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012826 mRNA upstream 119406 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012829 mRNA upstream 145387 9112999 ~ 9152405 (-) True AMCG00012829
TU49217 other downstream 2458885 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6730900 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7137842 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8375472 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 144829 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3272784 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4147281 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8912613 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8986451 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile