RNA id: TU49940


Basic Information

Item Value
RNA id TU49940
length 636
RNA type TUCP
GC content 0.55
exon number 1
gene id AMCG00012829
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9112441 ~ 9152405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACCTCAGTCCTGCCCTTCCCCATTGATTATTACCCCATCGTGGGCAGCGTGATGTGTCAATCTAGTGAAAACTGAAAGTAGGATTATCCGTTTTAAGATGCCGTTTTCGTGGGGGGACGCGTCTCAGAAGCCAAGTTCACAGCGCAACTCaccttctgtctgttttttggTCTCGTTATAAAGTGCCCAAAGCGAGCTGGTCATGTCCTGCCCGCTGCCTGCACTGGTACACAGAGGAGCAGTCCTGTTTGGGGGGCTACGGTGGGACAAGACCTGCTCGGCTCCCCTTGCCACTCCGGTGGTACCGAGCCATTGTAGCCCCGACTGCCTCCCTTTCGGCCCCGAAGCCCGGCTGCGAAAATCCCGTCTTCCCCCGCCGCTGTGTAAACCCTTGCAACCGTTTAGTAATTTCTTCAAACTGTCTCCGTTTCTCAGGCTACTCAAAAGGGACAAAGCCATGGACGACATGGCTGGTTACGGTCTGGActgcacagccacacacacacacacaagtctgGGTCCTGTCACCCGGACTAATACCCTCGCCGCGTCCGTCTGAGCTGCATGCGGCTCCAGGTCCTTGTTTAAATACCGACAACTACTCCGGCGGTTCATCATAACACAGGCTTTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49922 lncRNA downstream 26648 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 210960 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 445417 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 542552 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 843220 8268994 ~ 8269221 (-) True G39839
TU50011 lncRNA upstream 123824 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 573734 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1112618 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1436581 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 1615419 10728495 ~ 10728820 (-) True G40323
AMCG00012826 mRNA downstream 18511 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012824 mRNA downstream 29110 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012822 mRNA downstream 50116 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012825 mRNA downstream 81091 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012827 mRNA downstream 144829 8915063 ~ 8967612 (-) True AMCG00012827
AMCG00012830 mRNA upstream 39480 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012831 mRNA upstream 58190 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012837 mRNA upstream 767760 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012840 mRNA upstream 1310301 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012842 mRNA upstream 1324245 10437321 ~ 10441546 (-) True AMCG00012842
TU49217 other downstream 2656263 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6928278 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7335220 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8572850 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 3127320 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4001817 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8767149 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8840987 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 9062985 18176061 ~ 18191522 (-) True G41807

Expression Profile