RNA id: AMCG00012830


Basic Information

Item Value
RNA id AMCG00012830
length 2277
RNA type mRNA
GC content 0.48
exon number 21
gene id AMCG00012830
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9152556 ~ 9170975 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAGCCACTCCAAGTTTGCAGTTAAGGCTATAGCAAGAATGGATGTTGCCATCCTTCCGCAACGAGAAGAGGAGGTCAATAAGGAGAAGCGCAGCTGGGCCTGTCCCTCCCTGGCTGTAGTCATGCATGCTTTAAAGAAGTTCTTCAACCAGAGTGCTGTCCTGGATACTGGGGACCTGATTGTATTGAGTGCCCAAAGACAGCAGAGGGTGTCTGCAACAACAGAGGAGTTTGTTCCGAGGGTCTGGCAGGCAATGGGACCTGTGCTTGTATGTTGTGTGCATGGGCTTTGCAACAATGGGATAGGAGGTGATGGGGTATGCACATGTTTTTCAGGATACAAAGCTCCAAACTGTGATCAGCCTATAGCTGAATGCACTGCTTTACAATGCCCACAGCATGCCAGGTGTATAGAAGAAGCCAACACTGGGAAACTCGTGTGTAAATGTTTGCCAAGTCACAAAGGAGATGGAACTCACTGTACGCCCATCAATCCCTGCTTGAAACAAGTCTGTCACTCAAGTGCTGTCTGCACCTACCTCGGCCCTAATCTCCACAACTGCAAGTGCGCAGAAGGGTACAAAGGTGACGGGCAGGTCTGCATGCCAGTGGATCCCTGCCAGGACAACTTTGGAAACTGCTCTCCAGACTccactgtttgtgtttatataggtCCCGGAAAGTCTCACTGTCGGTGTAAAAAGGGATTTGAGAACATGATAGCAGGAATTGGATGCAGCCTAACagacatttgcaaaacaaacaacacctgCGACAAGAATGCAAAGTGTGAGACCCTCCACCCAGAACAGATAGAATGCACATGCAATGAGGGATATGTTGGTGATGGGAAGACCTGCTATGGAAATATCATGCAAAGGTTACGAGAGCTTAATTCGGAGCCTGGTGGGAAGTGGACAGGGCAGCTTTCCAATGCCATCACACTGTTTGGTACACTTCCCAGTGAGAGTATAGTAGATGTCGCCCCGCTTCAGCATCTCATAACTCAGCTCACCTGCCGCTACATGCAGCTTCGAGAGGAATCGGTGGAAATGGGACTTGTTTCTGTGAGAAAAACTTCAAGGGATCTCGATGCCAATATTGTTCCGACCCTAACAAATATGGACCCAACTGTGACAAAAcatgtCCCTGTGTTCATGGAGAGTGTGACAATCGCCCAGAGAGTGACGGTTCTTGCAAAGAGGGCACCTGCCAGGCCACATACACAGGCCGGTTCTGTGAAAGACACGTACAGACATGTGGACCGCGTGTGGATAAGGCCCCAGTTCACACATGCTGTGTCCCTGTACCTCACTGACTGTACTTTACGCCAGTTGTGTAACATACCAAATTGTATTGTGTTCTGgaccatgtttttaattaaaacccctCTACAAAATGTGTCTCCTAAGGCGAAGTGTATAAAGACAGGACCTGGGACCCATGAGTGCAGCTGCCTGACTGGCTGGAGGGCTGATGGCGATGAATGTCAGGAAATCAACAAATGTATGGAGCCAGACAGGGGTGGCTGCCACCCGAATGCCACCTGCATCCACATTGGGCCTGGACTGAGTGACTGCGAGTGTAAAACAGGTTTCCGTGGAAATGGGATAATTTGTGAAGCAGTCAATCCATGTGTGGAACAAAATGGAGGATGTCACCTCATGGCATCATGTGAATACCTCTCTCCAGGAACATGGAAGTGTATTTGCCTGCAAGGATATGTTGGAGATGGGCGTATTTGTTATGGAAATGTGGCAACAgagCTATCTGCCATACCTGATGGGGGAGAATTCCACAAATGGGTGAATGATGCTGGTCTCTATCAGATGATCTCCGAGTACAATTTAACCCTGCTGGTGCCCTCCAATAGTGCAGTGGACAAAATGACCAAGGAAGATAAGGGTTTTTGGCTGACACGAAAGAACTTGCCAAGCATTGTGAAATATCACACAGTGCAAGGCATTTACCAGCTGACAGACCTACAGAATCGGTCTTCCTCTTCTCTGCTCTCGTTTCTGGGCAAAGCTCCCCTTCGCGTGGTGAACATAAATGGGGTGTTAATACCAGATCGCAAACTGAGTGAGGGTCTGCCCGAAATGCTTGCTAAGCTAAGCGACATGCCTGAATATTCGATCTTCAGAGGCTATCTAATCCAATACAACCTGACAGAGCAAATAGAAGAATCTGATGCCTACACTTTGTTTGCTCCCAATAACATCGCGATCACCGACTACGTGAAGCAAAAAGGCTCATTGaATTCTTCtatctaa

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49922 lncRNA downstream 66763 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 251075 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 485532 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 582667 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 883335 8268994 ~ 8269221 (-) True G39839
TU50011 lncRNA upstream 65925 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 515835 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1054719 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1378682 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 1557520 10728495 ~ 10728820 (-) True G40323
AMCG00012829 mRNA downstream 151 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012826 mRNA downstream 58626 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012824 mRNA downstream 69225 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012822 mRNA downstream 90231 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012825 mRNA downstream 121206 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012831 mRNA upstream 291 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012837 mRNA upstream 709861 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012840 mRNA upstream 1252402 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012842 mRNA upstream 1266346 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012841 mRNA upstream 1273116 10444091 ~ 10489781 (-) True AMCG00012841
TU49940 other downstream 39480 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 2696378 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6968393 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7375335 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8612965 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 3069421 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 3943918 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8709250 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8783088 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 9005086 18176061 ~ 18191522 (-) True G41807

Expression Profile