RNA id: AMCG00012831


Basic Information

Item Value
RNA id AMCG00012831
length 450
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00012831
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9171266 ~ 9250923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGAGCCTCTTGGAGGGTACCTTTGCAAATTACTGCGGCAGTGAAAAAGATGGTCATCAAGGCCTTATTATCTATGGGCCGCCTCCTACGGTGCACTTCCGCTTCCTGCCAGCAGGGGCCACTGTCACCATGACAACGGACCCTCAGGCTAAGGCGTCCACAGATGAGGAGATCCACAGCACGCTCCCAGAACTGCAGGAGCCAAAGAAGCTGATGAGAATATCAATGCCCTGTCCCTGGAAGACAACGGCTTTAAAAGTCTGGCTGTTAAAATGTGCCTGCTATGAAATGAACACATGTGACAAGAAGGCTGTTGTCACAACTCGAACAGAATGTCGATCATGTGCCCTCAATGCCAAGGTGAACTGCCCTGATGGTTACAAGAAGATGACAATAGGGAGTGGGAACTCAGACTGCAGAGGATTTGAACCAGTGCAAGTGATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49922 lncRNA downstream 85473 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 269785 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 504242 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 601377 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 902045 8268994 ~ 8269221 (-) True G39839
TU50084 lncRNA upstream 435887 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 974771 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1298734 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 1477572 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 1487059 10737982 ~ 10738597 (-) True G40325
AMCG00012830 mRNA downstream 291 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012829 mRNA downstream 18861 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012826 mRNA downstream 77336 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012824 mRNA downstream 87935 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012822 mRNA downstream 108941 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012837 mRNA upstream 629913 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012840 mRNA upstream 1172454 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012842 mRNA upstream 1186398 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012841 mRNA upstream 1193168 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012845 mRNA upstream 1242439 10493362 ~ 10525888 (-) True AMCG00012845
TU49940 other downstream 58190 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 2715088 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6987103 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7394045 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8631675 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 2989473 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 3863970 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8629302 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8703140 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 8925138 18176061 ~ 18191522 (-) True G41807

Expression Profile