RNA id: AMCG00012832


Basic Information

Item Value
RNA id AMCG00012832
length 2766
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00012832
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9375167 ~ 9382501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAACGAAGCTAGCCTGGAGGGCGGGGAAGGGGGGCTCTCCGGATTACCAGAAGGGGTTGCGGGAGATGGAAAGGGGGGCTTTATCCAGATCCCCGCAGGAATGGAGGCGGATCTGAGCCAGCTGAGCGAGGAGGAGAGGAAACAGATCGCAGCCGTAATGCAACCAGAGTTAGATGCACACCATCAGCCCAGACAGCCAGGAAAACCCCCAACCCAGGGGCCTTCTGGTATCAGTAAAAGCCAGACAGTTGATGtcttcaaaactgaaaaaatccCACCCGGAAGGAGCCCCTCTTCAATCAGTCTTTTAGAGTCTCGATCAAGGCCTGAGGCCAGAGAAGAACAGAAAGCAGCCATGATGCCCAGTTTCCTTAGCGAGGGCAACCCCCTCAGTGCAATGTCCTCTGTTGTCAATAAATTCAGCCTCTTTGGGGATTCAGATTCAGATGAAGCTGCCAAGAAGCAAAAAGGTCCCCAGCAACAACCGCCTAAATCACCTGGACCACAGCCGGGGCCTGCTAAAGCTCCTCAGCAACAAGGACCAAGGccaggacagcagcagcagggttCCCCTAAACCAGGGCCTGCTAAGCATGGAACACAACAGCAAGGGCCTCCAAAGCCAGGAATGCAAACACAAGCCCAACCCCCACCTGGGCCCCAGCATCAAGGGCCAGGCAAACCTCCATCTCAACAAAAAGGTCCcctccaacaacaacaacaaccacaacaacaagtGACTGGAAAACTTGGGCCTCAGCAGCAAGGGCCTCCTAGAGCTGGAACACAACAGCAGGGCCCTCCTCCCTCAGTCCCCCAGCAACAAGGCTCCCCCATGCCTGGCATACAACAGCAAGGCCAGCCTAGGGGAGGACCACAGCATGCCACCCCCATGCCTCAGCAACAGGCTCCTGGGAAATCTAGGCCTGAGCAACAAGGAACTGCCAAGCCTGGGACTCAACAACAAGCTCCGCCTGCCTCTGGAGCTCCACAGCATGGGCCGGCCAGGTCTGggccacaacaacaacaagggcCTGTGAAGCCCGggccacaacaacaacatgggCCTGTGAAGTCCGGGCCTCAACAACCAGGGCCTCAGCAACCAGGACCTGCGAAGCCTGGGACTCACCAACCAGGGCCTGCCCAGATGCAAGGGGCTGCTAAACATCCTGCAGAGCAGCCAGGTTCTGGAAAGGCTCATTCTCGGCAAGGCGGCCTTTCTGGTTCAGCAGGTACGGGCCCCAGTGCTGCTCCTGCTGAGAAGAAATCTCTTTGTCCTCTCTGTAAAACCACTGAACTACTTCTTCACACACCAGACAAGGCTAATTATAACACCTGCACACAGTGTCAGACGGTGGTGTGCAGCCTGTGTGGATTCAACCCCAATCCTCACATGACGGAGGTCAAGGAGTGGCTCTGTCTCAACTGTCAGATGCAGAGAGCACTGGGGATGGATGTGTCTGCACCCCCGATGGCAAAGCCTCAGCAACAGCATCCCAAACAGCCATCCGCCCCTGGTTCCCCTCAGCGAGCCAAACAGGCATCGCCAGCACCCCAGCCTCAAAAGATTGAACCAAGCAAAACCCCCGAAATTAAGAAAGCCACCCCTGTAGCCAAGCAGCCGGAGACCCAGCCCGTAAAGCCTGCTGCCGCCTCCGCGGCACAGCAACCAGCAGTACAGAAGCCATCGACTCCAGTGCCTGATCAGCACAAACCGATACAGCAGAAACCGCCAGGGGCACAGAAAGCCCCAGATCAGCCTTCCTCTCCAGCACCTGGAGTAAAGCAAGCTACACAAGGCCCCCAAGGAACCCCTGTGCAGCAAAAGCCTGGTGCATATCCTCAAGATCTTGCAAAGCCACCACCGCAGGTTCCTCCAGCTGATCCGAAACTGCAGCCTCAACAAAAACCCACTACCAAacccacagagacacacggGGAAGCCAAAGGTCAGAAAGCAGGCGAGCCGGCGAAACAGCCACCGATGCAACAGCCGAAAAGCGCTCCACCGAAAATTGATCCCAAAACTAGCCGTCCATTACAGGAGCCAGTGAAGTCAGAACTGCCAATGCCAAAAGGTTCCCCAGGACCACCTTCTGCCAAATCTGCACAGCCTGCACAGACTCAACCAAGTCAGCCGCCTCCCAAACCTCAAGAGCAAGGAAGGCGCTTCAGCTTAAACATCGGGGGATTGGCCGAGACACCCAAGCCTCAACCTACTACTCCCCAAGAAACTGTCACCGGGAAGCTGTTTGGATTTGGATCTTCCTTTTTCAGTCAGGCATCAAACTTGATCAGTACAGCTGTGCAACCAACAGATCAGCCCGCTCCTGCCCAGCTGGCCTCTGCCCACCCGGCTCCCGCCCAGCCAGCTCCTGCGCAGACCAACGCCAAGCAGCCTGCTTCAGCCCAGTCCTCGCCCAAAGTGACTCCTGCGAAGAAGGAGACCAAACCCCAAGTGGCACAGAAACCAGAGCAACCCCCAACAGGGAAAGCCCTTCCTCCCGCTCAGGAGAAGAAGCCCATCCCTGTCACAGAGAGTAAACCACAAGCGGAGGTGCCAAAGGGAGCGGTAGCAAGCACCGCCCCGGCAACAACAGCCCCCGTACCTCCAAAATCCACACGGTCCAACTGTCCACTCTGCAAGGTCGAGCTCAACATTGGTTCTAAGGATCTGCCTAACTATAACACCTGTACAGAATGCAAGAATACCGTATGCAATCTATGTGGATTTAATCCGATGCCCCATCTCACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50017 lncRNA upstream 80525 9294331 ~ 9294642 (+) True G40121
TU50015 lncRNA upstream 110074 9264878 ~ 9265093 (+) True G40119
TU49926 lncRNA upstream 281321 9091314 ~ 9093846 (+) True G40041
TU49921 lncRNA upstream 289478 9084074 ~ 9085689 (+) False AMCG00012818
TU49901 lncRNA upstream 321348 9051087 ~ 9053819 (+) True G40022
TU50049 lncRNA downstream 91044 9473545 ~ 9473868 (+) True G40145
TU50050 lncRNA downstream 91472 9473973 ~ 9474220 (+) True G40146
TU50116 lncRNA downstream 789753 10172254 ~ 10172463 (+) True G40203
TU50128 lncRNA downstream 992530 10375031 ~ 10424371 (+) True G40214
TU50179 lncRNA downstream 1158227 10540728 ~ 10541960 (+) True AMCG00012848
AMCG00012828 mRNA upstream 120612 9251194 ~ 9254555 (+) True AMCG00012828
AMCG00012820 mRNA upstream 244956 9112606 ~ 9130211 (+) True AMCG00012820
AMCG00012819 mRNA upstream 263391 9095412 ~ 9111776 (+) True AMCG00012819
AMCG00012818 mRNA upstream 289467 9083662 ~ 9085700 (+) True AMCG00012818
AMCG00012816 mRNA upstream 297266 9064317 ~ 9077901 (+) True AMCG00012816
AMCG00012833 mRNA downstream 29825 9412326 ~ 9469248 (+) True AMCG00012833
AMCG00012834 mRNA downstream 251733 9634234 ~ 9691339 (+) True AMCG00012834
AMCG00012835 mRNA downstream 319769 9702270 ~ 9723930 (+) True AMCG00012835
AMCG00012836 mRNA downstream 369135 9751636 ~ 9770671 (+) True AMCG00012836
AMCG00012838 mRNA downstream 500623 9883124 ~ 10314250 (+) True AMCG00012838
TU49939 other upstream 262066 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 1538953 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 1647339 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 2857246 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 3551847 5807846 ~ 5823320 (+) False AMCG00012718
TU50138 other downstream 1054406 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 1054406 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 1054406 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 3106074 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 3107298 12489799 ~ 12490422 (+) False AMCG00012894

Expression Profile