RNA id: AMCG00012835


Basic Information

Item Value
RNA id AMCG00012835
length 3667
RNA type mRNA
GC content 0.39
exon number 18
gene id AMCG00012835
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9702270 ~ 9723930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGACTAACTTGTGCGGATCCCCGGCGAGCAGCATGCGGCGGCcccggctccggctccggctcctGCTCTGCGCGCTGCTGGCGCTGCTGGCGCTGCTCTCAGAATGTAAACGTCCCAGGAGAAACGATCTTCACGATTACCAGAAGAGTGACGGGGTCTGGCTAGTCAAATCCGACAGTTCCCATCAGACCAAAAGCAAAACCCTCAGTGAGGTGAAGTGTGCCAGGCGATGTAGTCGCAACAAGGGATTACCTTTCATTTGCAGGGCATTCTACTTCGACCAGAAAAACGGGAAGTGCCACTGGCTGTCATTTGATAGTAACACTCAGGGTGTTAAGAGGGAGCAAAATTTTAGTATCGACCTTTATGAGAAAAAAGATTACACAAGAGAGTGCATCGTTGGTGAAGGATCCAACTATAAAGGACGGAGATCTGTTACGAAAGGAGGCCTCAAGTGTCAGGCTTGGACTTCAACTGTTCCCCATGATCACAACTTCTTGCCTACGAGGTACAAGAGAAAGGACCTCCTGGAGAACTATTGCAGGAATCCAAATAATGAGACCACGGGACCTTGGTGTTATACTACAGACCCAAGCACCCGCCATCAATCTTGTGAAGTTCCTCAGTGCTCCGAAGTTGAATGTATGACCTGCAATGGGGAAAATTATAGAGGACCCATGGACCACACAGAAACTGGGAAAGAATGTCAGCGCTGGGATTTGATGAGACCTAACAAACACCAATATCCTGATAAAGGACTGAAGGATAATTATTGCCGCAATCCTAATAACCGTCTTCGGCCATGGTGCTTCACTCTGGACCCCAAAACCCCTTGGGAATACTGCAGCATTAAAGTCTGCGATGTTAACACCAAAACGGATCAAGACACGACTACAAAGTGCTTCAAAGGCCAGGGGGAGAAGTACAGAGGGACAGTTAACATTACCCCCAATGGAGTCCAGTGTCAGCGTTGGGACTCCCAGATACCCCACAACCACTCCTACACTCCCCAGAACTACAAATGCCAAGATCTGAGCGAGAATTACTGCCGAAACCCAGATGGTGCAGAGCTGCCGTGGTGTTTCACCACCGATCCCAAAGTGCGAATGGCTTTCTGTACCAACATCCCTAGATGCGagtGTTATGAAGGTAATGGCGAAGACTATCGAGGTCATTTATCCAAGACAAGATCTGGGATACCCTGTATGATGTGGGAAGAAAGTATTCAATACAAAAGCTGGGCACCAAATTTGTCAGCTGCTGGTTTGGAGAAGAACTACTGCAGGAACCCTGATAAAGACAAACACGgTATGTCTTCATCCAACATGATCCCTCCACAGAgtgATCTATCGCAGACTTCCTGTTTTGTTCACAAGAGAACAAGAATTGTTGGGGGTGGACCAGTGCGAATCAAGGAAGCAAGCTGGATGgAACACTCACTGGTGTGGCGGATCATTGATAAGAGAAGAGTGGGTTCTTACAATGTACCAGATTTATCGGAATATAGCATCTGGTTGGGATTCCTTCACCTCAATGAAACTGGAAGGAACATTTCCGAAAAACAAGTTTTGAGGATCGCTCATGTGGTTTGTGGTCCTGAAGGCTCCAATCTTGCATTGCTGAAATTATCCGGCCTTGCTTTGCTGAAGGAACATGTTCGCATAATTAATCTCCCGATCGCAGGATGTACCATTCGGGAAAACACCAATTGTACCATGTATGGATGGGGCGAGACAAAAGCTGTGCAATTACCAATGGTTagcaatgaaaaatgcaatgaGTATCACGGAGGGAGTTTCCCAATAAACGACTCAAAAATTTGTGCTGGAGGAAAAAGGGATGAAGGAGTTTGTGAGAAAGACTATGGCGGCCCCTTGGTGTGCGAAGAAGGCGATATTAAAGTTGTACTCGGCGTGAGTGTTCATGGCAGAGGCTGTGGCCGTCTCAACCGCCCTGGGATTTTTATCAACGTGCCCTATTATACCGAGTGGATGCACAAAGTCTTcagatattatttaaatgtggaaaaaaattaCTAGAAAAGCAACTTGATAAACTGAAGCCTTACGTTGGGCATTTGTTTAATAGGTACATTGATAATTGACATCTGTGATGTTTtagaagtattttttaaatgtattataatggtTAATCGAATCCAATTTGGGGATTTTGTTGccatttcttttcattgttcTAGATTTgttactatatttaaaaaaccaCACAAACCGGAATGTAGAACTTCATTGGGTGGAATTGGGACTGAACAAAATGgtaaagttttttgtttttgaatgtgttcaatatattttaaataggatATAGGATAGGATAGTggcacacttttatttttattttttattttattttatttatagtcaGTAATCCTATTCTGTAATTTTGGCTGTCACATGaacttttcaaaatatattgcctAATGTCAATAATGTTACATATACATGAATAGTTAAACTGATCAAGTACTAAATAATATCAGTGACCAAAATTGTAAGAATAATCATATCGATAGTAATACGTTTTACCTGTTCAGTATTATCTCCTGAGAACACTTGAATATGTACAAGATAAAATTCAGTTATGTACTAAATATTaccaaatattttcaatttagtgCACATACGTATACACCCACACACCAAcatgcatgtatatgtatatccaTTCAAGATAAAACTGCTATTTGTACTAGAATGTAATTTACAGTTAAGCAGGTGTACatacttttaaagtttttaattggGTTTGTCGCAGACAGTCCTCAATGTATTGTAGGTCTTATAGATCTCCAGGTGTATTGAGAATACTTACAAtttgttgtaaagtgctattctccatttcagtttttttttttttttttaccaaacaGGGATAATGTACTTCCTTATTCCATGTATTAACTTTCCATTTATATTTGGCAACATTAAatagtctgtttttttttgtatttttattattacacgCATGATTTGAagatttaatattattagtagtaattaCTAGGATTAcctatatttttgttgttttttttagattattGGTTTCCAACTCCCATTAGTTAAGTATTGCAGCTAGTGTCTAAAATTAGCATAGCAGAATTGTACCTCGCAATCCAGATGAATTGTGGCCATAATGTTCTGTTGTCTTTACTGTGAAAggcctttttgtgttttaagtatACTTtaattttgggaaaaaaaaagccaaggTACAAccattgtgtgatttattttgaaatgtatttttagtcaCCTTATCCATGTATACACATGTAACACAATAGCTGCTAGAGTTAGACTGATGACAATTTGTATAATGAGACCATTAGGAATACTAGATTATATTTTCTGCTGGACAGAATATGTGGAATATGTAATTATACATGTCAGTATTTTTCGTGATAGGCAGAGCctaatatttaagtattttcctACATTGCTTGATTTTCTTCAGAATCAGTTTGAAAACAATTttcaacccccacccccccccattATTGTAGTGTTCTTCCAAGCATGTGTTTTTGTCAAACTCTAATGCTTAGAGTCTGCCCAGTCccaacagatttttttttaatatttttaaatttaaaatattaatatacttttttgcAAGCCTTAAACCTCAAATTATAATAGCTAGG

Function

GO: NA

KEGG:

id description
K05460 HGF; hepatocyte growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50050 lncRNA upstream 228050 9473973 ~ 9474220 (+) True G40146
TU50049 lncRNA upstream 228402 9473545 ~ 9473868 (+) True G40145
TU50017 lncRNA upstream 407628 9294331 ~ 9294642 (+) True G40121
TU50015 lncRNA upstream 437177 9264878 ~ 9265093 (+) True G40119
TU49926 lncRNA upstream 608424 9091314 ~ 9093846 (+) True G40041
TU50116 lncRNA downstream 448324 10172254 ~ 10172463 (+) True G40203
TU50128 lncRNA downstream 651101 10375031 ~ 10424371 (+) True G40214
TU50179 lncRNA downstream 816798 10540728 ~ 10541960 (+) True AMCG00012848
TU50237 lncRNA downstream 1016502 10740432 ~ 10743104 (+) True G40303
TU50386 lncRNA downstream 1379895 11103825 ~ 11159087 (+) False G40436
AMCG00012834 mRNA upstream 10931 9634234 ~ 9691339 (+) True AMCG00012834
AMCG00012833 mRNA upstream 233022 9412326 ~ 9469248 (+) True AMCG00012833
AMCG00012832 mRNA upstream 319769 9375167 ~ 9382501 (+) True AMCG00012832
AMCG00012828 mRNA upstream 447715 9251194 ~ 9254555 (+) True AMCG00012828
AMCG00012820 mRNA upstream 572059 9112606 ~ 9130211 (+) True AMCG00012820
AMCG00012836 mRNA downstream 27706 9751636 ~ 9770671 (+) True AMCG00012836
AMCG00012838 mRNA downstream 159194 9883124 ~ 10314250 (+) True AMCG00012838
AMCG00012839 mRNA downstream 685397 10409327 ~ 10410281 (+) True AMCG00012839
AMCG00012843 mRNA downstream 747935 10471865 ~ 10492477 (+) True AMCG00012843
AMCG00012844 mRNA downstream 808049 10531979 ~ 10534605 (+) True AMCG00012844
TU49939 other upstream 589169 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 1866056 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 1974442 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 3184349 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 3878950 5807846 ~ 5823320 (+) False AMCG00012718
TU50138 other downstream 712977 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 712977 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 712977 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 2764645 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 2765869 12489799 ~ 12490422 (+) False AMCG00012894

Expression Profile