Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00012836 |
| length | 1116 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 11 |
| gene id | AMCG00012836 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 9751636 ~ 9770671 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0031047 | gene silencing by RNA | biological_process |
| GO:0016442 | RISC complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| K15979 | SND1; staphylococcal nuclease domain-containing protein 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50050 | lncRNA | upstream | 277416 | 9473973 ~ 9474220 (+) | True | G40146 |
| TU50049 | lncRNA | upstream | 277768 | 9473545 ~ 9473868 (+) | True | G40145 |
| TU50017 | lncRNA | upstream | 456994 | 9294331 ~ 9294642 (+) | True | G40121 |
| TU50015 | lncRNA | upstream | 486543 | 9264878 ~ 9265093 (+) | True | G40119 |
| TU49926 | lncRNA | upstream | 657790 | 9091314 ~ 9093846 (+) | True | G40041 |
| TU50116 | lncRNA | downstream | 401583 | 10172254 ~ 10172463 (+) | True | G40203 |
| TU50128 | lncRNA | downstream | 604360 | 10375031 ~ 10424371 (+) | True | G40214 |
| TU50179 | lncRNA | downstream | 770057 | 10540728 ~ 10541960 (+) | True | AMCG00012848 |
| TU50237 | lncRNA | downstream | 969761 | 10740432 ~ 10743104 (+) | True | G40303 |
| TU50386 | lncRNA | downstream | 1333154 | 11103825 ~ 11159087 (+) | False | G40436 |
| AMCG00012835 | mRNA | upstream | 27706 | 9702270 ~ 9723930 (+) | True | AMCG00012835 |
| AMCG00012834 | mRNA | upstream | 60297 | 9634234 ~ 9691339 (+) | True | AMCG00012834 |
| AMCG00012833 | mRNA | upstream | 282388 | 9412326 ~ 9469248 (+) | True | AMCG00012833 |
| AMCG00012832 | mRNA | upstream | 369135 | 9375167 ~ 9382501 (+) | True | AMCG00012832 |
| AMCG00012828 | mRNA | upstream | 497081 | 9251194 ~ 9254555 (+) | True | AMCG00012828 |
| AMCG00012838 | mRNA | downstream | 112453 | 9883124 ~ 10314250 (+) | True | AMCG00012838 |
| AMCG00012839 | mRNA | downstream | 638656 | 10409327 ~ 10410281 (+) | True | AMCG00012839 |
| AMCG00012843 | mRNA | downstream | 701194 | 10471865 ~ 10492477 (+) | True | AMCG00012843 |
| AMCG00012844 | mRNA | downstream | 761308 | 10531979 ~ 10534605 (+) | True | AMCG00012844 |
| AMCG00012848 | mRNA | downstream | 770611 | 10541282 ~ 10541470 (+) | False | AMCG00012848 |
| TU49939 | other | upstream | 638535 | 9112460 ~ 9113101 (+) | False | AMCG00012820 |
| TU49527 | other | upstream | 1915422 | 7835346 ~ 7836214 (+) | True | G39709 |
| TU49477 | other | upstream | 2023808 | 7725488 ~ 7727828 (+) | True | G39670 |
| TU49223 | other | upstream | 3233715 | 6517408 ~ 6517921 (+) | False | AMCG00012748 |
| TU49057 | other | upstream | 3928316 | 5807846 ~ 5823320 (+) | False | AMCG00012718 |
| TU50138 | other | downstream | 666236 | 10436907 ~ 10444447 (+) | True | G40224 |
| TU50139 | other | downstream | 666236 | 10436907 ~ 10444447 (+) | False | G40224 |
| TU50140 | other | downstream | 666236 | 10436907 ~ 10444447 (+) | False | G40224 |
| TU50630 | other | downstream | 2717904 | 12488575 ~ 12535929 (+) | True | G40629 |
| TU50637 | other | downstream | 2719128 | 12489799 ~ 12490422 (+) | False | AMCG00012894 |
