RNA id: AMCG00012840


Basic Information

Item Value
RNA id AMCG00012840
length 3328
RNA type mRNA
GC content 0.42
exon number 19
gene id AMCG00012840
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10423377 ~ 10436550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATATCCCGTCGACACTTTGAATTTGAAGATGGCGGCGTCCATGTACGAACATGCAGTACACATGAAAACGTGTAAAAGTAGTAATTTAATGGTaacaacttaatttattttttgctcgTTACggccttgcattttattttcactaaaaaaaggctttgaattcttaaaaaaatatatatacgaaaaaacaaacaaaaaaacccgTGTCCAATTTGTTGTTATTAGTTTGTTGGACGtttgtgttaaataattaaataatggctAGTTCAACTGTATTTGTGAGGAATCTGCCCCAGTCAGCGCGAAGTGATCGCCTGGAGGAAATCTTTTCTGATGTCGGACCGGTGAAACATTGTTTTGTGGTTAAAGAGAAAGGTGCCGAGAAATGCCGTGGATTTGGTTATGTTACCTTTTCCATGGAAGAGGACACACAGAGGGCTTTGAAAGAGATCAGAGAGTATGACGGACAGAGGATCACGCTGGCACTGGCgaagaaaaagcaacacaagaaGAAGCATGTGTCCCAAGAGTCAGCCCCGAAAGAGCAGAAACCAAAAACGATGAAGAAGTCCAAGAAAAAAGCAAGGCTGATAATTCGAAATCTCAGCTTTATGTGCGCAGAAGATGATCTGAAGCAGTTATTCTCTAAATATGGAACAGTCCTAGAAGTGAATATTCCACGCAAACCAGATGGGAAAATGCGGGGGTTTGCCTTTGTCCAGTTTAAGAATGTCCTGGAAGCTGGGAAAGCCCTTAATGCAACAAATCTGAAGGAGGTCAAAGGAAGGCAGGTGGCCGTTGACTGGGCAGTGGCGAAGGATAAATTTGTTGCTACACAGCCATCCTCCTCCTCAGCATCTAAGAAAGAAgaggtgaaagaaaaagagagcCATGATTCTGACAGTGAGCACAGtgcagaagaggaggaggaggaagaaactGAAACCCTTCCAAAGTCCAAACCTGGCAAACAGCCACCTATGCAGTCTGGGAGTGATGGTGAAGCACAGAGTCCTGCCGAGGAAAGTGCATCTGATCAtagtgaagaggaagaggaggatgaagatatggatgatgatcatgatgatgatgatgatgatgatgacgacgatgatgatgatgattctcACTCTGATCTGAGTGGATCTGAAGATGaggatgatgtaAGTCCTGTCAAAAAGAAGCCCCTGCCCTCAGATGCCCATGAAGGGAAAACCGTATTTATCAGAAATCTTTCTTTCAACACAGAAGAGGAAGGATTAGAGGAAGTTCTGCTGCAGTTTGGAGAACTTAAATACATTCGCATTGTGCTTCATCCAGATACTGACCACTCTAAAGAAGCTGCCCAGAAATGTGTCGAAGCATCCCAGGATGAATCTGAGACGGGTGGAATTCGAGTGGATGGGCGCAAGTTAAATATTGTGCTAGCAGTAAGTCGAGAGGATGCGGTGAAGATGAAAGACACCAAGAAGAAAGAGCATACTGGAACCAGAAATCTGTATCTAGCGAGAGAAGGCTTAATCCGAGCAGGAACCAAAGCAGCCGAAGGAGTTTCTGCTGCAGATGTTGAGAAGAGAACAAGAtttgaaGAACTGAAACGCATGAAGCTGcgcaatattaatgtttttgtctcGAAAACCCGCCTGTGCGTCCACAACCTGCCCAAGTCTGTGGACATCAAGCGGTTAAGGATGTTGTGTTTAAAGGCAGCAGGAGGAGGCCAGGGTGTGCGCATCACTGAGtGTCGTGTGATGTATGACAGGAAGCCCGAGCCGGGAAAGGTAGTGGGACGCTCCCTGGGGTATGGCTTTGTTCAATTCCAGGAACACGAGCATGCCCTGAGGGCCCTCCGTCACTTGAACAACAATCCTGACATATTTGGTCCAGAGAAGaGGCCGATTGTCGAATTCTCTCTGGAAGACAGTAAGAAgctaaaaataaaggaaatgagAGTACAAAAGAGCAAGCAAATAGTGAAAAAAGGAGAAGGAACTGAGCATCAGAAGAAGGAAACCAAGCACAAAGGAAGTATTCAGAAACAGGTGCAGGGTAACGCCTCAGCCCCTTGCCTGGTGGGCGAATTGGATGCAGGAAAGAAGGGACTTTGGTCAGGATTCAAAACCAAGCCAGAGGTAGAAAACGTGGAACTGCCTGATGGCAAGAAGAGAAGGAAGGTCCTACCCCTTCCCTCACACAAGGGGCCAAAAATTAGAAAACGAGATAAGGGAAAACAGCTCCAGGTACAGCCACAGAAGCCCAAAAACCATCCAAGCAGAAAGGATAGATTTTCTTCCCTCTCTGCAGAAAAACAAGGCCAACAGAGAATCCAGGCTCCTAAGAGGCAGAAGAATACATTCAGGAGTAAGGAGGATGATCGGTTTGACAGTCTTGTggaacagtacaaaaaaaaacttattgGGAATCCCAAGGTATCTATTGTGAAAAAGGGCAAATGGTTCAGCGGTTAATGCTCTTCAAGCTGAAAAGCTTTCCTTTGGCTCCATTAAAGTCACCTATTTGCTCGCCCCTGGATCAAATCCAGTTAGCTGTTGACGTAGAAGTCTACAATGTAGAGAtttcttaaaagcattttccccatctacttttttctttctttcaaatactggaaaaaaaagagtGCATTTTGTGAACGGTTGAAAGCATGTAACTGGACACCACCTGGAATGTACAATGACAGGATGTCAAGGAAACTTTTGAATGCCAGGTAAAAGTGAAGCAAGCTATTGGGAGCGATCTTTTTTGCAGAGCTTTTTTTGGATAAGTCAGTCGCACAAAGAAGTTGCACTAGATTCCAAATTAAACCAAGatacaaatattgtttattacacTCTATCACGATTTCTTCAGAGGAGTGGATTTGTCATAATTAGTAGTTTTCCGcaacatgttaaatgttttctgcTGGTAACGTAATTTGTATGTTCTGTCTCCCAATACATGTCTGCTATATACATAAGTGCATCAGACAAGAATGGAcagggtgtttttttgttttgttttttatgttgttttaccAAGAGGACCAGAAgatttggaaatatatttgtattgtatacaaattttaatactttttatcCCTTTGCAAAAATCCTACTAATTTGTAATGGTGGGtagaatattttacaaaatacatttaaaagaccATTACATTATTGAAACATTTCTACCTTAAGAAAAAATTGTATgatatgtaaacaaaacaaaacaaaaaaacacaaaaaaacatataggattttttccccccatcctGTGGTCCAAATGTCCTGACTCATTATTTGCTGTAAGAGgaataaactattaaaaaca

Function

GO: NA

KEGG:

id description
K14573 NOP4, RBM28; nucleolar protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50119 lncRNA downstream 197420 10225694 ~ 10225957 (-) True G40206
TU50084 lncRNA downstream 732466 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 1165926 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 1337584 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 1521896 8900113 ~ 8901481 (-) True G40008
TU50194 lncRNA upstream 113107 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 291945 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 301432 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 302535 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 303345 10739895 ~ 10740301 (-) True G40327
AMCG00012837 mRNA downstream 540607 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012831 mRNA downstream 1172454 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012830 mRNA downstream 1252402 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012829 mRNA downstream 1270972 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012826 mRNA downstream 1329447 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012842 mRNA upstream 771 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012841 mRNA upstream 7541 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012845 mRNA upstream 56812 10493362 ~ 10525888 (-) True AMCG00012845
AMCG00012847 mRNA upstream 115875 10552425 ~ 10556698 (-) True AMCG00012847
AMCG00012846 mRNA upstream 130881 10567431 ~ 10574509 (-) True AMCG00012846
TU49940 other downstream 1310301 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 3967199 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8239214 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8646156 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 9883786 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1803846 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2678343 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7443675 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7517513 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7739511 18176061 ~ 18191522 (-) True G41807

Expression Profile