RNA id: AMCG00012841


Basic Information

Item Value
RNA id AMCG00012841
length 534
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00012841
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10444091 ~ 10489781 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGGAGCAGGAAGACGATCCCGAACGCTGAGagagggagagagagagatggagaggggggagggggcaggcgCAGACTGCAGAAGCTGTGTAACATGCTCAGCATCCATGAAAAGaTGTGCACCACGGTGGCCGACAGTGATTTCGACCACTTTGAGACCAAGGAAAGAGTCGGAAGGGTTTTTTTCCCTCGACTGCAGGGACTGTTCCAGGGAGTCAGTCTCCTGTATTTTAGGGTCTTCAAGAAGTATACTGTCGATTACTACAATGACAGCATCAATGTCTTCTGGAACACACCTGTCAAAGCCCCAGCGCTGTTCTTCTTCTGTGACAATGATCCACTCAGTGACAGTGAAGAGGTAGAGAAACTGACTGGGCACTGGCAGACACAGGGCATCAGTGTGGGGAAGAAGCGCTGGAAGGAGTCCATTCATGCTGGCCATCTAAGGGAGCACCCTGAAGACTACCTGACGACACTACATAACTTTGTACAGTCTCTCAACCTTTTTGgtttaaaagcaacattttga

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50119 lncRNA downstream 218134 10225694 ~ 10225957 (-) True G40206
TU50084 lncRNA downstream 753180 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 1186640 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 1358298 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 1542610 8900113 ~ 8901481 (-) True G40008
TU50194 lncRNA upstream 59876 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 238714 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 248201 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 249304 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 250114 10739895 ~ 10740301 (-) True G40327
AMCG00012842 mRNA downstream 2545 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012840 mRNA downstream 7541 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012837 mRNA downstream 561321 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012831 mRNA downstream 1193168 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012830 mRNA downstream 1273116 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012845 mRNA upstream 3581 10493362 ~ 10525888 (-) True AMCG00012845
AMCG00012847 mRNA upstream 62644 10552425 ~ 10556698 (-) True AMCG00012847
AMCG00012846 mRNA upstream 77650 10567431 ~ 10574509 (-) True AMCG00012846
AMCG00012851 mRNA upstream 122828 10612609 ~ 10626275 (-) True AMCG00012851
AMCG00012854 mRNA upstream 140245 10630026 ~ 10630954 (-) True AMCG00012854
TU49940 other downstream 1331015 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 3987913 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8259928 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8666870 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 9904500 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1750615 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2625112 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7390444 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7464282 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7686280 18176061 ~ 18191522 (-) True G41807

Expression Profile