RNA id: AMCG00012842


Basic Information

Item Value
RNA id AMCG00012842
length 912
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00012842
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10437321 ~ 10441546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCATGTGTCTTGGTGATGTCATGCACTCGTTTTGGAACAAAAGGGTGCGAGAGAGAAAGTCAGGctggacaggacaggacaggacaggacaggacaggacaggacgaGATCGTCTCACGCCACAGCATCGATACACAAAACCTTCACAGGCGGATATTGATCTGTCCCACAACTGCGGCACTGGGGACAACCCCACGCTAATTCTGGGGCAGAAAATACCGGCAGAAAATAGGATCCACCCCGCTTGTTCCCtccacccctcccctcccccggGCAAAGCGCCGTCCTCCATGTCTACGTCCTTTTCCTCTATCCTCCCTCCTATCTCCACGCTGCCTACTGACTGGTATGCTTGCTGCTCATCATGGGCCGCATCCTACGCTAGGCCCTGGTTTCCTCTTCCGCGGTCCTCGCCTCGCTCCATTGCTGGCGGCGGGCTCCATCCTTCCAAGCCCCTCTTTCGCTGGTGCCCTCCCTGCAGCCCCTGGCGGCTGTTTCCCCGGCCCTCCGTGCAGATCTGTGTGGCTCTTTCCCTGCTCGTGAAACGAGTCGGAAAGAGTATGTTTCCTCGCCTTCAGGGACCAGTGCAGGGAGTCAGTCTCCTGTATTTTAGGGTCTTCAAGAAGTATACTGTCGATTACTACAATGACAGCATCAATGTCTTCTGGAACACACCTGTCAAAGCCCCAGCGCTGTTCTTCTTCTGTGACAATGATCCACTCAGTGACAGTGAAGAGGTAGAGAAACTGACTGGGCACTGGCAGACACAGGGCATCAGTGTGGGGAAGAAGCGCTGGAAGGAGTCCATTCATGCTGGCCATCTAAGGGAGCACCCTGAAGACTACCTGACGACACTACATAACTTTGTACAGTCTCTCAACCTTTTTGgtttaaaagcaaaattgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50119 lncRNA downstream 211364 10225694 ~ 10225957 (-) True G40206
TU50084 lncRNA downstream 746410 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 1179870 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 1351528 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 1535840 8900113 ~ 8901481 (-) True G40008
TU50194 lncRNA upstream 108111 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 286949 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 296436 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 297539 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 298349 10739895 ~ 10740301 (-) True G40327
AMCG00012840 mRNA downstream 771 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012837 mRNA downstream 554551 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012831 mRNA downstream 1186398 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012830 mRNA downstream 1266346 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012829 mRNA downstream 1284916 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012841 mRNA upstream 2545 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012845 mRNA upstream 51816 10493362 ~ 10525888 (-) True AMCG00012845
AMCG00012847 mRNA upstream 110879 10552425 ~ 10556698 (-) True AMCG00012847
AMCG00012846 mRNA upstream 125885 10567431 ~ 10574509 (-) True AMCG00012846
AMCG00012851 mRNA upstream 171063 10612609 ~ 10626275 (-) True AMCG00012851
TU49940 other downstream 1324245 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 3981143 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8253158 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8660100 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 9897730 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1798850 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2673347 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7438679 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7512517 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7734515 18176061 ~ 18191522 (-) True G41807

Expression Profile