Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00012846 |
| length | 1026 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | AMCG00012846 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 10567431 ~ 10574509 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| id | description |
|---|---|
| K04252 | OPN1SW; short wavelength-sensitive opsin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50194 | lncRNA | downstream | 16054 | 10549657 ~ 10551377 (-) | True | G40266 |
| TU50119 | lncRNA | downstream | 341474 | 10225694 ~ 10225957 (-) | True | G40206 |
| TU50084 | lncRNA | downstream | 876520 | 9686810 ~ 9690911 (-) | True | G40172 |
| TU50011 | lncRNA | downstream | 1309980 | 9236900 ~ 9257451 (-) | True | G40115 |
| TU49922 | lncRNA | downstream | 1481638 | 9083660 ~ 9085793 (-) | True | G40039 |
| TU50257 | lncRNA | upstream | 153986 | 10728495 ~ 10728820 (-) | True | G40323 |
| TU50259 | lncRNA | upstream | 163473 | 10737982 ~ 10738597 (-) | True | G40325 |
| TU50260 | lncRNA | upstream | 164576 | 10739085 ~ 10739378 (-) | True | G40326 |
| TU50261 | lncRNA | upstream | 165386 | 10739895 ~ 10740301 (-) | True | G40327 |
| TU50262 | lncRNA | upstream | 165845 | 10740354 ~ 10743231 (-) | True | AMCG00012858 |
| AMCG00012847 | mRNA | downstream | 10733 | 10552425 ~ 10556698 (-) | True | AMCG00012847 |
| AMCG00012845 | mRNA | downstream | 41543 | 10493362 ~ 10525888 (-) | True | AMCG00012845 |
| AMCG00012841 | mRNA | downstream | 77650 | 10444091 ~ 10489781 (-) | True | AMCG00012841 |
| AMCG00012842 | mRNA | downstream | 125885 | 10437321 ~ 10441546 (-) | True | AMCG00012842 |
| AMCG00012840 | mRNA | downstream | 130881 | 10423377 ~ 10436550 (-) | True | AMCG00012840 |
| AMCG00012851 | mRNA | upstream | 38100 | 10612609 ~ 10626275 (-) | True | AMCG00012851 |
| AMCG00012854 | mRNA | upstream | 55517 | 10630026 ~ 10630954 (-) | True | AMCG00012854 |
| AMCG00012853 | mRNA | upstream | 67209 | 10641718 ~ 10644387 (-) | True | AMCG00012853 |
| AMCG00012852 | mRNA | upstream | 69881 | 10644390 ~ 10656133 (-) | True | AMCG00012852 |
| AMCG00012858 | mRNA | upstream | 167821 | 10742330 ~ 10753698 (-) | False | AMCG00012858 |
| TU49940 | other | downstream | 1454355 | 9112441 ~ 9113076 (-) | False | AMCG00012829 |
| TU49217 | other | downstream | 4111253 | 6455721 ~ 6456178 (-) | True | G39487 |
| TU47984 | other | downstream | 8383268 | 2183885 ~ 2184163 (-) | True | G38490 |
| TU47949 | other | downstream | 8790210 | 1776854 ~ 1777221 (-) | True | G38458 |
| TU47757 | other | downstream | 10027840 | 523747 ~ 539591 (-) | True | AMCG00012628 |
| TU50581 | other | upstream | 1665887 | 12240396 ~ 12253443 (-) | True | AMCG00012888 |
| TU50830 | other | upstream | 2540384 | 13114893 ~ 13115487 (-) | True | G40778 |
| TU52042 | other | upstream | 7305716 | 17880225 ~ 17899426 (-) | False | AMCG00013038 |
| TU52041 | other | upstream | 7379554 | 17954063 ~ 18043587 (-) | False | AMCG00013042 |
| TU52091 | other | upstream | 7601552 | 18176061 ~ 18191522 (-) | True | G41807 |
