RNA id: AMCG00012849


Basic Information

Item Value
RNA id AMCG00012849
length 2703
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00012849
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10590198 ~ 10608349 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGTGGCAAACCGTCCCTTGTTCTAGTGTATCAGGCCGTGCAGGCTCTTTATCACGACCCAGACCCGGCCGGCAAGGAGCGAGCCTCCGTATGGCTCGGGGAGCTTCAGAGATCGATGTATGCTTGGGAGATATCCGATCAATTGCTCCAGTTAAAACAGGACGTTGAATCCTGTTATTTTGCGGCACAGacgatgaaaatgaaaattcagACCTCATTTTATGAACttcctgcagaaacacacatcGCCCTAAGGGACTCACTGCTGTCACACATACAGAACCTTAAAGACCTCTCTCCCATCATTGTCACCCAGCTCGCTCTAGCAATAGCCGACCTTGCCCTGCAGATGGCATCTTGGAAAGGGTGTGTCCAGACGCTTATTGAGAAGTACAGCAACGATGTCTCCTCACTCCTGTTTTTGATTGAAATCCTCACTGTTTTGCCTGAAGAGGTGCACAGTCGCTCCCTTCGAATCGGTGCCAATCGTCGTACTGAGATCATTGAAGACTTGGCTTATTACTCGAGCACTGTTGTGACTCTTCTGATGTCTTGTGTGGAGAAGACAGGGAGTGATGAGAAGATGCTAATTAAGGCATTCCGTTGCCTTGGGAGCTGGTTCAACCTTGGAGTTTTGGATAGCAATTTTATGGCCAACAACCAGCTGTTAATGATACTCTTCCAGGTGCTGCAAAGGGATGAGACTCCCACCAACTTGCATGAGGCAGCCTCAGACTGTGTGTGCTCTGCACTGTATGCAATCGAGAATGTAGATAACAACATGCCCCTAGCACTGCAACTATTCCAAGGGGTCCTGACATTGGAGACCGCCTACCACATGGCTGTGGCTCGGGAGGATCTAGACaaGGTTTTGAATTACTGCCGTATTTTCACCGAGCTGTGCGAGACGTTCTTGGAGACGATTGTAAGGAGTCCTGGTCAGGGCATGGGAGACCTGCGGACACTAGAGCTCCTCCTTATCTGTGCAGGACACCCGCAGTATGAAGTTGTAGAGATCTCCTTTAATTTCTGGTATAGACTAGGAGAACATCTATATAAAACCAGTGACCCAATGCTTCATGGGATATTCCGACCGTACATCCAGAGATTGCTGCACGCATTGGCCAGACACTGCCAACTAGAACCTGATCATgaaGGAATACCTGAAGACACGGACGATTTTGGCGAATTCAGGATGAGAGTGTCAGATCTGGTGAAGGATGTGATTTTCTTGGTCGGATCCATGGAGTGTTTCTCACAGCTTTACTCCACCCTGAAAGATGGGAATCCACCGTGGGAGGTGACTGAGGCTGTGCTGTTTATAATGGCTGCTATTGCCAAGAGTGTAGATCCtgaGAATAACCCAACCCTAACAGAAGTGCTGGAGCAAGTGGTTCTCCTTCCCCAGACTGTGCACATTGCTGTGAGATACACGAGCATTGAGCTGGTGGGAGAGATGAGTGAGGTTGTGGACCGCAATCCCCGTTTCCTagATCCTGTCCTGAATTATTTAATGAAGGGGCTGAGGGAGAAGCCCCTGGCCTCGGTCGCCGCTAAAGCAATTCACAATATCTGCTCCGTGTGCCGAGACCACATGGCTCAGCACTTCCAAGGCCTCTTAGACATCGCCCGGGCCCTGGACTCCTTCGCATTGTCTCCAGAAGCCGCTGTGGGGCTCCTGAAAGGCACTGCCTTGGTTTTGGCTCGGCTCCCCCTAGAGAAGATTGCTGAATGCCTAAGTGATCTCTGCGCAGTTCAGGTTATAGCCCTTAAAAAGGAGCCAAGCAATGGTAAATCTTCAGACCCCACAGTATGGCTAGATAGATTAGCAGTAATTTTCAGGCACACAAACCCTATTGTAGAAAATGGCCAGACGCATCCATGTCAAAAAGTTATTCAAGAAATTTGGCCTGTCCTGTCGGAAACCTTAAACAAGCACCAGGCAGATAACAGGATTGTGGAGCGCTGCTGTCGGTGTCTGCGCTTCGCAGTACGCTGCGTTGGGAAGGGCTCAGCCGCTCTCTTGCAGCCTCTGGTCACTCAGATGGTGAATGTGTATCAGGTTTACCCCCACTCATGTTTCCTGTATCTGGGAAGCATCCTGGTGGACGAGTATGGGATGGAGGAAGGCTGTCGACAGGGCCTTTTAGACATGTTACAGGCTTTGTGTATGCCTACATTTCAGCTGCTGGAACAGCCCAATGGTCTGAGAAATCACCCTGATACCGTAGATGATCTCTTCAGACTGGCAACAAGGTTCATACAGCGCAGTCCAGTCACCCTGCTCAGCAGCCAGATCATCATCCATATTATCCAGTGTGCCATCGCTGCCACCACGCTGGACCACCGGGACGCCAACTGCAGCGTCATGAAGTTCGTTCGGGATCTCATCCACACCGGTGTCACCAATGATCACGAAGATGACTTTGAGTTACGCAAGGAATTGATCCAGCAGGCGATGGGTCAGCATGGGGCACAGCTCGTGACTCAGCTGTTACACACCTGTTGTTTCTGCCTCCCACCCTACACACTGCCTGACGTGGCTGAGGTTATCTGGGAAATTATGCTCTTTGACCGGCCGATATTTTGCCGCTGGCTGGAGAGTGCGTTGAAGGGGCTGCCAAAGGAGACATCCGGAGGAGCGGTGACAGTGACACACAAGCAGCTCACGGACTTCCACAAACAAGTCACCAGGTAA

Function

GO: NA

KEGG:

id description
K15436 TRPO3, MTR10; transportin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50179 lncRNA upstream 48238 10540728 ~ 10541960 (+) True AMCG00012848
TU50128 lncRNA upstream 165827 10375031 ~ 10424371 (+) True G40214
TU50116 lncRNA upstream 417735 10172254 ~ 10172463 (+) True G40203
TU50050 lncRNA upstream 1115978 9473973 ~ 9474220 (+) True G40146
TU50049 lncRNA upstream 1116330 9473545 ~ 9473868 (+) True G40145
TU50237 lncRNA downstream 132083 10740432 ~ 10743104 (+) True G40303
TU50386 lncRNA downstream 495476 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA downstream 548685 11157034 ~ 11159087 (+) True G40436
TU50467 lncRNA downstream 685868 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA downstream 716274 11324623 ~ 11354359 (+) False G40496
AMCG00012850 mRNA upstream 40132 10546551 ~ 10550066 (+) True AMCG00012850
AMCG00012848 mRNA upstream 48728 10541282 ~ 10541470 (+) False AMCG00012848
AMCG00012844 mRNA upstream 55593 10531979 ~ 10534605 (+) True AMCG00012844
AMCG00012843 mRNA upstream 97721 10471865 ~ 10492477 (+) True AMCG00012843
AMCG00012839 mRNA upstream 179917 10409327 ~ 10410281 (+) True AMCG00012839
AMCG00012859 mRNA downstream 58411 10666760 ~ 10685175 (+) True AMCG00012859
AMCG00012860 mRNA downstream 78204 10686553 ~ 10689804 (+) True AMCG00012860
AMCG00012855 mRNA downstream 90692 10699041 ~ 10740121 (+) True AMCG00012855
AMCG00012866 mRNA downstream 216671 10825020 ~ 10862300 (+) True AMCG00012866
AMCG00012862 mRNA downstream 266203 10874552 ~ 10882625 (+) True AMCG00012862
TU50138 other upstream 145751 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 145751 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 145751 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 1477097 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 2753984 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1880226 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1881450 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3819964 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3919813 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 4024008 14632357 ~ 14633413 (+) True G41059

Expression Profile