Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00012850 |
| length | 957 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | AMCG00012850 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 10546551 ~ 10550066 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0042470 | melanosome | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0033018 | sarcoplasmic reticulum lumen | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K23901 | CALU; calumenin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50179 | lncRNA | upstream | 4591 | 10540728 ~ 10541960 (+) | True | AMCG00012848 |
| TU50128 | lncRNA | upstream | 122180 | 10375031 ~ 10424371 (+) | True | G40214 |
| TU50116 | lncRNA | upstream | 374088 | 10172254 ~ 10172463 (+) | True | G40203 |
| TU50050 | lncRNA | upstream | 1072331 | 9473973 ~ 9474220 (+) | True | G40146 |
| TU50049 | lncRNA | upstream | 1072683 | 9473545 ~ 9473868 (+) | True | G40145 |
| TU50237 | lncRNA | downstream | 190366 | 10740432 ~ 10743104 (+) | True | G40303 |
| TU50386 | lncRNA | downstream | 553759 | 11103825 ~ 11159087 (+) | False | G40436 |
| TU50385 | lncRNA | downstream | 606968 | 11157034 ~ 11159087 (+) | True | G40436 |
| TU50467 | lncRNA | downstream | 744151 | 11294217 ~ 11354359 (+) | True | G40496 |
| TU50464 | lncRNA | downstream | 774557 | 11324623 ~ 11354359 (+) | False | G40496 |
| AMCG00012848 | mRNA | upstream | 5081 | 10541282 ~ 10541470 (+) | False | AMCG00012848 |
| AMCG00012844 | mRNA | upstream | 11946 | 10531979 ~ 10534605 (+) | True | AMCG00012844 |
| AMCG00012843 | mRNA | upstream | 54074 | 10471865 ~ 10492477 (+) | True | AMCG00012843 |
| AMCG00012839 | mRNA | upstream | 136270 | 10409327 ~ 10410281 (+) | True | AMCG00012839 |
| AMCG00012838 | mRNA | upstream | 232301 | 9883124 ~ 10314250 (+) | True | AMCG00012838 |
| AMCG00012849 | mRNA | downstream | 40132 | 10590198 ~ 10608349 (+) | True | AMCG00012849 |
| AMCG00012859 | mRNA | downstream | 116694 | 10666760 ~ 10685175 (+) | True | AMCG00012859 |
| AMCG00012860 | mRNA | downstream | 136487 | 10686553 ~ 10689804 (+) | True | AMCG00012860 |
| AMCG00012855 | mRNA | downstream | 148975 | 10699041 ~ 10740121 (+) | True | AMCG00012855 |
| AMCG00012866 | mRNA | downstream | 274954 | 10825020 ~ 10862300 (+) | True | AMCG00012866 |
| TU50138 | other | upstream | 102104 | 10436907 ~ 10444447 (+) | True | G40224 |
| TU50139 | other | upstream | 102104 | 10436907 ~ 10444447 (+) | False | G40224 |
| TU50140 | other | upstream | 102104 | 10436907 ~ 10444447 (+) | False | G40224 |
| TU49939 | other | upstream | 1433450 | 9112460 ~ 9113101 (+) | False | AMCG00012820 |
| TU49527 | other | upstream | 2710337 | 7835346 ~ 7836214 (+) | True | G39709 |
| TU50630 | other | downstream | 1938509 | 12488575 ~ 12535929 (+) | True | G40629 |
| TU50637 | other | downstream | 1939733 | 12489799 ~ 12490422 (+) | False | AMCG00012894 |
| TU51090 | other | downstream | 3878247 | 14428313 ~ 14433201 (+) | True | G40999 |
| TU51114 | other | downstream | 3978096 | 14528162 ~ 14529806 (+) | False | AMCG00012940 |
| TU51166 | other | downstream | 4082291 | 14632357 ~ 14633413 (+) | True | G41059 |
