RNA id: AMCG00012851


Basic Information

Item Value
RNA id AMCG00012851
length 2296
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00012851
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10612609 ~ 10626275 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTGACTCCCGGAAGGGTGGGACCTGTGCAACTTCTGCAAACTTTGCGTCACTTTCACATCATGTTTAACACTGTGCAAATTTATCAGGAAGCACAGAGGAAACATTTTTGTCCTGCCTACCCATTGgcgtttttattttcattttcagaggaGTTATATGGCGTCGGTGATACGAACGACGTTTTTTAGGTGAATGTGCGGAGACCCTGCGCGTACAGGACGTGTGAGTGGCCGGTCAGGAGTGACATCTGGTAGACGTTGTGTTTTCCTATCCCATAGACTGCTGTCTTGATTGACCCacaagggaaaataaatcacaactgTCAGCAACTGCAATACGAGGTGATCTCCAGGGCCGCTGAAGcccccccacccttccCCAGCCCCTCTTGTTACTGTGAGAGATAGATTTCCACTATGAGTATTCAGCCCCGCAGGATCCGTCTGAAGCCCTGGCTCATAGCTCAGGTGAACAGTGGGAAATACCCTGGGCTACAGTGGTTAGACAAAGAACAGAAGCTGTTCCAGATACCCTGGCGTCACGCCACCCGTCACATGCCTACACTGGAGGAGGAGAACACCATCTTCAAGGCCTGGGCACTGGAAACTGGGAAATACCAAGAGGGAGTGGATGAACCCGATCCAGCCAAATGGAAAGCGAACCTGCGCTGTGCCCTCAACAAGAGCCGCGAATTCAGACTGAAGTACGACGGCACCAAGGAGACCCCCGTTGAGCCGTACAAAATATACGAGGTGTGCGACCAACCGTATAATGGAGATCCCCCCAGTTATTCAGCCATCCCCTTCATCAATAACACTTTTGGGTCTAGCAGCCTTCCTCAGATGGGTCTCCTGCACAACAGCATCACTCCCAATCCTAACGGCGGTGTTGCTATAGACGTGCCACACCAGACAATGACTCTGCCCGAGTTTCACAATGACATTTCACTCGACCTCAGGCATGGAGGCTTCATACACGGCAACGGTGCAGCAGGCCCAGGAGACATGGGACACGGTAGCATTCCCCGGGGACACAGCGAGATGCCACCAACCCCCATCTCGGCTGACATTGCCGATGCCCCCATGACTGCGGTCATCAATCCTCAGGGAGATTACCGGGGGAGGGCGGCAGGGTGCTTGACTGTAAGTAACCCTCAAGGTTGCCGGCTGTACTACGGGAACCTGGAGCCCACGCCTGAGCAGGTGGATTTATTTGGcccagtgactctgcagcaggtGCTCTTCCCCAACACGATGGAAATCCCCAACGAGAAGCAGCGATACTACACCAACCAACTCTTAGACGTCATGGACAGAGGCCTCATCCTGGAAATCCAGGGACAGGATATCTATGCAATCCGCCTGTGCCAGTGCAAAGTGTACTGGTCTGGGCCTGGCGTTTTGGAACAGGCTGGGCCGAATCCCATTGAAAGGGAAAAGAAGATTAAGGTTTTCAGTTTGAACAATTTCCTCCAAGGGCTGATCTTGTACCAGAAAGGGGAAAATAATGCTCCACCTCCCTTTGAAATCTACTTCTGTTTTGGAGAAGACTGGCCAGACAGGAAACCAAAAGAGAAAAAGCTCATTATTGTccagGTGATTCCGGTTGTGGCCCGAATCCTCACAGAGATGTTTTCCGGCGAGCTCTCCTGGTCCACCGATAGCATTCGACTTCAGATCTCCAACCCAGACCTCAAAGACCAAACTGTGGAGCAATTTAAAGAGCTTCACCGACTCTGGCAGAACCAACAGACTCAAGCCCAGTGGGGTCTGCAGCCATCCAACCTGACCTGAGCGTACACCTCTGCATTTCTTATGAGCTTTTAAAACTATTCCGGGCGGAGAAAGgttcattttaatgaaagttaGCCATTCTTCTTGATACACAAATCGACCGGACATGCTGCCAGAAAGACTTCATTccctttaaattacatttcaacttGTGATGTCCATTTACTTGAATGTTATTTGCAAATCAACTTTGTcaacattgtcttttttttttttttttggtccaaattattttatttttgttttaaggagTTATAGGCCATAATTAAGCTATGCATTTTTGTTCTGCAACCACACAGTTGCAATATAAGAACTAGGTAATGGAGGCTTATGAGTAAACCACTGTTTTTTCAGAACTAGGTGGGGGAATCACCAGGATTAAAAAGATGGCCAAGATTGTGTAATGCAAATGAACTTCCTCTGTTTTAAGAACTTGAGTGACTGCTGTGGCATCTGatggtttcatttttcataataaaagaCATATTTCTCACTATGA

Function

GO: NA

KEGG:

id description
K09446 IRF5; interferon regulatory factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50194 lncRNA downstream 61232 10549657 ~ 10551377 (-) True G40266
TU50119 lncRNA downstream 386652 10225694 ~ 10225957 (-) True G40206
TU50084 lncRNA downstream 921698 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 1355158 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 1526816 9083660 ~ 9085793 (-) True G40039
TU50257 lncRNA upstream 102220 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 111707 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 112810 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 113620 10739895 ~ 10740301 (-) True G40327
TU50262 lncRNA upstream 114079 10740354 ~ 10743231 (-) True AMCG00012858
AMCG00012846 mRNA downstream 38100 10567431 ~ 10574509 (-) True AMCG00012846
AMCG00012847 mRNA downstream 55911 10552425 ~ 10556698 (-) True AMCG00012847
AMCG00012845 mRNA downstream 86721 10493362 ~ 10525888 (-) True AMCG00012845
AMCG00012841 mRNA downstream 122828 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012842 mRNA downstream 171063 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012854 mRNA upstream 3751 10630026 ~ 10630954 (-) True AMCG00012854
AMCG00012853 mRNA upstream 15443 10641718 ~ 10644387 (-) True AMCG00012853
AMCG00012852 mRNA upstream 18115 10644390 ~ 10656133 (-) True AMCG00012852
AMCG00012858 mRNA upstream 116055 10742330 ~ 10753698 (-) False AMCG00012858
AMCG00012857 mRNA upstream 193984 10820259 ~ 10822853 (-) True AMCG00012857
TU49940 other downstream 1499533 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4156431 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8428446 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8835388 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10073018 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1614121 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2488618 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7253950 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7327788 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7549786 18176061 ~ 18191522 (-) True G41807

Expression Profile