RNA id: AMCG00012856


Basic Information

Item Value
RNA id AMCG00012856
length 1994
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00012856
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10857881 ~ 10862322 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAACAGTGAGGCCAGTGGCAAGTGCGGCTGTGTCTCATAAACGCGGAGTATCATGCCTTCCTATTTCCGCCGTGCTCGTTTTGTTGGTTTGTAAGAGcagcctgatttatttttcattcctgTTGGAAATCGCCAGTCTCCGCTGACAGCACAATGTCTACTGCACTAGAAAGCTACATCAACCGTATCCTCAAGCAAGTTCGTCATGTGTGTGCGGAAACCGATCACGCAAGGATGCATGTATGAATGGACGTGAATGATGGCTGTCGGAGACTCGGTGTGTTGGCCTAGTTTGCATGCGAGTGGATGTATAGTATACCCTTTTCAGGGGTAATGTTAATGATCAGTTACAAAGCAGGCAAACATCTCAAACTTTTTAAAGATACTTgcggttttatttttaattaacgatataaaacaaatatgcatgtTATTGTACTTACGTGTGCGATGCATGAGAATACATGTACCGTTTAGGAGTGATCTATGTTGTTGAAACGACGAGACACCTGATGATTTTATTGTACCTtatacataaagaaatacagtacaaaGGAGTACAAACTATTGCATTAGCTACGTGATCTGATTGAGTTGTTCATGTGTCAAAAGTTCTGGCCGGGGAACCTGTTTAACTCGGATAACTAATGATGCAAAGTGTATTTTGAGTGGAAACGTGTCTAATAAATAGTTTTCCTGCTGTATTTACCTTTACTGAGATCACGTGTGTCTATTCCCATGCGTTGTACCGATTATAAAGGTCTGAACAGTACtttacacatgcaaacacatgtGCCATTCAGGCTGTTATCAATGATCTTAAGTTTTTGACAGAATTATCCCTTAACTTGATGAACCGTAGGGACCGTGGCAATTATCACATCAGATGGCAGAATGATCGTGgGGACTCTTAAAGGATTTGATCAGACAATTAATCTGATCCTTGATGAGAGCCATGAGAGAGTTTTCAGTTCTACACAGGGAGTTGAACAAGTGGTACTAGGATTATACATTGTCAGAGGAGACAACGTGGCTGTGATTGGAGAGATCGATGAAGAAACGGATTCAGCCCTGGATCTGGGCAACATTCGTGCAGAACCACTCAATTCTGTTGTCCACTGACAGCACTGCTGGGATGGAGGTTTCAGATGTTGGCTTTTAGGGTACCTGGATATTCATCTAGGGAGAAATCCTCTTGTGGACTTCCttaaggactttttttttttgtgtgtgtgtgaatgttcaTCAGCGTTTTGTACTGaagacaaaaatagaaacaaagcattttttaatcTGCTATTCTTAAATTGCATGAGGTTTAATCATTACTGACTGATTACTGGTGCAAGACTGGCAGTAGAGTCTAGTTTGGATATCCAGAAATTTTAAATCCTGGAAGTGGAATTTCAAaatttgtatatttctataaaaCCTTTAGACTAATAAGAgcaatgactttttttttgctgttgcaAGTAAAACAATGGTCATGtagttttgcatttctttcatACTTGTACTCCTTTGTAGGTTTCATGTTTTCCAGTATGACATGCATGTTAGGAAATGTTGTTTGCAAATTACTTCcaaaagagcaatacaaaatctATATATCTCCTTTGACATTGATAAATTCCCATAGAAATGTCTGACGCCAGAGGAGGCTCTTAAACCAAACACTGTagcataaaaaaatatcacggatggggaaaacaaaaggcaTCTCAAAAATATACCATGCCACTTTTAAGCAGTGGCTGAAGACTTTAGAAATATCTCCCTTTGCAAAACAACTTCCTTAAAGAccatatgtatacatgtacttGCTTTATGGTTAAGCTGTTGTGTGGTGTTAACATGCAtaggctatttatttaaaaccgtttataaagaaaaaggtcagtgtttttctttattaaaatgaaaataatagtaTGGCTTCTCTTGGATGATTATTCAAGTAAGTTGAAGGGTTTTTAAGGCAGGGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50262 lncRNA downstream 116571 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 119501 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 120424 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 121205 10737982 ~ 10738597 (-) True G40325
TU50257 lncRNA downstream 130982 10728495 ~ 10728820 (-) True G40323
TU50578 lncRNA upstream 1374907 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 1721189 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1878853 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 2034198 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 2034932 12897254 ~ 12899282 (-) False AMCG00012906
AMCG00012857 mRNA downstream 36949 10820259 ~ 10822853 (-) True AMCG00012857
AMCG00012858 mRNA downstream 106104 10742330 ~ 10753698 (-) False AMCG00012858
AMCG00012852 mRNA downstream 203669 10644390 ~ 10656133 (-) True AMCG00012852
AMCG00012853 mRNA downstream 215415 10641718 ~ 10644387 (-) True AMCG00012853
AMCG00012854 mRNA downstream 228848 10630026 ~ 10630954 (-) True AMCG00012854
AMCG00012861 mRNA upstream 80518 10942840 ~ 10979099 (-) True AMCG00012861
AMCG00012867 mRNA upstream 145611 11007933 ~ 11030339 (-) True AMCG00012867
AMCG00012868 mRNA upstream 204828 11067150 ~ 11084825 (-) True AMCG00012868
AMCG00012869 mRNA upstream 234163 11096485 ~ 11120770 (-) True AMCG00012869
AMCG00012875 mRNA upstream 285970 11148292 ~ 11161963 (-) True AMCG00012875
TU49940 other downstream 1746726 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4403624 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8675639 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 9082581 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10320211 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1378074 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2252571 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7017903 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7091741 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7313739 18176061 ~ 18191522 (-) True G41807

Expression Profile