RNA id: AMCG00012857


Basic Information

Item Value
RNA id AMCG00012857
length 1734
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00012857
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10820259 ~ 10822853 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCCGGATACGGAAGCAGTGCTGTTTGTCAGCTGATCAAGTGAGTTCAATTTTCTGCAAGTAGTCTGCTAACCCGAAACAGAAATAGCTTAAAACACTAGATAGAGCAGCACTTGAGAGAGGATCGTCTCCGTCCACAATGGCAGGCCGAGGGAAGCTGATCGCGGTGATCGGAGACGAGGACACCTGCACGGGGTTCCTGCTCGGCGGGATCGGGGAGCTCAATAAGAACCGCAAACCCAATTTTCTGGTGGTTGAAAAGGACACCAGCATTACCGAGATAGAGGAGACCTTCAAGAGTTTCTTGGCTCGTGATGACATTGGGATCATCCTGATTAACCAGTTCATCGCGGAAATGATCCGCCATGCTATAGATGCCCACTTGCAGTCCATACCTGCTGTGCTTGAGATCCCATCTAAGGAGCATCCCTACGATGCCTCTAAGGACTCCATTTTGCGAAGGGCCAAAGGCATGTTCAGCGCTGAAGACTTCCGCTAAACGCCAAAGGAAGATGGCAGGCAGGGCAGCTATTGTGATCTGGTTGCTGCTAAGAGCATAGAAAGTTATCCCTCAGTCACTGTTAcgttattttcaaaactgcattCCATGGCAGAAAACCCTTTATCTTCAAATGATAAATGATTTGactgttttaaaacttaattactttggtgctgtgtttttttttgtttgtttgttttttagtttttttacttcCATTTGACATCAcagttgaaaatgaataataactCCAAGTGTTTTTCCtactattttctgtttttagtttttgacaGATGACGATGTTATGATTGACAACCAGTAATAAAAAGAGCTGCATCTTTAGACCTTAGTGATACGTCAAATGACAGATTTGTTAGCTTTTGAATTAGATTTAAACTAGATGTCTTTTAGCTCCTCCCTCTCCTTGGAAAGACAGGCAGCACTCGCCCAATGTCATTTAAGATTtctagggctagaccaaataaaaacttagATTTTAATTCATTCTAGGCTACCACACCACCATGAGTCACTGTTTTAAAAGTGTCATGAGGGGGGTTTCTGTGgcctaaattaaatcaaaatggaaaaataaaatgtacgccatcatgattaattttatttcaatcaCAGGACCAGATATATATGTAGgatgatatttttaaaatgtacgtAAGCAATGGTAGGGAAGGAGTTAGTACTGAAATGGAAATTTgtagttaaaatataaatggtttaataaacCATAGGAGGCACAAATGTACCACACCCAATGCAATGTGATGGAAAAGGTGGTCTCTGACTGAGAAGTTAAAGAGTGAAAAGGGGATTTAATCTATTATTTTATACTGGaggcttttgaaaaaaacatcttaaaaactACATTGCCGAAGCTGCGTCCATTGGTAAGGGCTGCCTGCCTTAGATGTTGTAGAATAAATGGTAAATATATTAACTTATTCGTTCAAAATGAGACTGATGTTGAGAATATATTGATGTTCGTTTAATATGCCGTGTGTGAGTGTATTGTCACCATCTATGGAATCTCtataaaaatctaaagaaagCTTGTTGTCTCCAATGATTTTCTATGGATTTTAAAGGCTAcacaattgaaatacatttgacattacATTATCTGTTGCATATTTgccaaaacattgttttcttaatactAAGAAAGGTTAGTGTGGACATTTACAAAATTATgccaatatttaaattaataatcc

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02151 ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50262 lncRNA downstream 77028 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 79958 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 80881 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 81662 10737982 ~ 10738597 (-) True G40325
TU50257 lncRNA downstream 91439 10728495 ~ 10728820 (-) True G40323
TU50295 lncRNA upstream 35028 10857881 ~ 10862312 (-) True AMCG00012856
TU50578 lncRNA upstream 1414376 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 1760658 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1918322 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 2073667 12896520 ~ 12899282 (-) False AMCG00012906
AMCG00012858 mRNA downstream 66561 10742330 ~ 10753698 (-) False AMCG00012858
AMCG00012852 mRNA downstream 164126 10644390 ~ 10656133 (-) True AMCG00012852
AMCG00012853 mRNA downstream 175872 10641718 ~ 10644387 (-) True AMCG00012853
AMCG00012854 mRNA downstream 189305 10630026 ~ 10630954 (-) True AMCG00012854
AMCG00012851 mRNA downstream 193984 10612609 ~ 10626275 (-) True AMCG00012851
AMCG00012856 mRNA upstream 36949 10859802 ~ 10862322 (-) False AMCG00012856
AMCG00012861 mRNA upstream 119987 10942840 ~ 10979099 (-) True AMCG00012861
AMCG00012867 mRNA upstream 185080 11007933 ~ 11030339 (-) True AMCG00012867
AMCG00012868 mRNA upstream 244297 11067150 ~ 11084825 (-) True AMCG00012868
AMCG00012869 mRNA upstream 273632 11096485 ~ 11120770 (-) True AMCG00012869
TU49940 other downstream 1707183 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4364081 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8636096 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 9043038 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10280668 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1417543 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2292040 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7057372 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7131210 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7353208 18176061 ~ 18191522 (-) True G41807

Expression Profile