RNA id: TU50262


Basic Information

Item Value
RNA id TU50262
length 2857
lncRNA type sense_over
GC content 0.29
exon number 2
gene id AMCG00012858
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10740354 ~ 10753698 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaagtgtAGGAAAAGGAATTGAgactgtttatgtattttaaactttatttatctAGTGaggtacaaaaaatatacaaagtataaaaaaataaatacacaaatgaaaaaagtaatatatttacgaacaataataataataataataataataataatacaaacaatcacAGTTACACCCAGTAACAAGTATAAATCAGGTCAACAACATCATTTGAAATAGACTTAAAGATATCaagtggttgttgttgttttatttcagatatGAAGCTATGTTTTCACaccttttaaacatttatctttGCTGATGACAGCTATAAcctaaatatgtaaaacaataaataatttggaATGGCATCTTATTGAGAAGGTCACTGAATTGCAGACTcgtaacatttaattttgtacacTGCACTTACATTTTATGGTACCACTGAGACAATGCTATTAAAAGTCTACTCAATGACAATCACTCTAGGtgatgtaaaaagaaaaaacaaacaacaaaaaaaactgttattcAAGTAGAGTCTCATTATTTGACAGTTATGGTCATATTGACACTTTTCtctcaattaaaaacaacaactttatttaccatgagaaaattaaaaataatagtttttattcTATTTCTGAAACTGCTGTACTAACCATTTGTTTCATCCTGTCAAATATCTCTCCTTATTTGACCTAATTTCTGCctagtatttaaaatgtgtattgtttggAAATGAAAGTGTTTGCAGGAATATGgatcttttcattttgtctttacattacagtatattctttagattattttgaaagcaaagattacataattaaaatagtgcttaattttaaactaagcaatttataattttataataaaactaGGCTCTTTTTTCTCagcttttaatattaaattgtagGGAACAAAATACTTTGTTAATAAATGCAAGcacacattcattattattattattagattatagactgacaacaaaacaacaacaacaacaacaacaataataataataataataataataataataataataataataataatctagtgaatttttaaacatattctgATCAAAACATGACCAATGTATAAAAACTGGGCTACCAAAGTCAAAAGCAGAGGTCAATCACATAAAGCAGGAACTTTATGTGGAACAGGGAACTGCAGTTAATCACTCCAATTTCTGTGGAATActgtttttttcagtgtttttattcggtgtacagtgtttattatttataatgaatgtgtccataaatacatattcacaaAAAATCTGTGAAATCTGATatgcttaattgttttaaaaccagATTGTATTCATTATCTAAATTAACACGGAGCCAACGAAGAAATCccttactaaaacaaaacaaaaatatcagaATAACCCTACTAAATGTATAATACTTTATAATGCTCATGGTTATTTTATGCATAGTATGACAAATGTAAGTAGACatgcttaaaatacaaaaaaagcttttcttacAGTTTGAACAGACACtacatagatatatagatagataattaAAGGACAATGTTTCTTTCcttgtgcatttttattaaaatgcagaaacaaaacttTCTGAAAATAGAGATCACATTATGtgctataaaatacaaaacgtTTAAGTCATCCAGTGAATcattaattacagtaaattCTGTCTTAAGgcagaaaacataaaaagacaTTGCCAGGagataaagtatatatatatacacacacattactctGCAGCTGGAGTGTGTACCTGTTCAATAAACTCTGCTCCAACAACAGCATTAAAAGCAGATCTTTGAAATTTAGAAACTTATTGGTGccacaaaaagtaaaataaaccaaatgaaaataagataaaacaaTGGGCAAGTATATCATTGTAACTATATAATAACCCAAAGATAATGCCAATCACTTCTGTCAGCAATCACTTCAGTTTGTATGAGACAAGTATATCATTAGAAGGATACACAcgtacttaatttattttatgataatgAAATCAGGATCTAGTGAAAATGGGAGTAAAGGTGTGTGATTTAATGAGATGTTCTTGAGAATTAAAGCAAACACTTGTGTTTTTGCGCAATATTTTAATACCAGAcagaacgtgtgtgtgtgtgtgttttattggattcatatattaatataataatacaattacccAATTTGTCCCCTTTATGTGGTACCAATACATTTCTGTCATTTACTTAAAATTCTCTAAATTGAAAAAGCACCTAGGGGGTTGCATTTATCACCCCACATTTATTCAGCTGGTGCCTGTTTAACAGTGACAGTCATAGGCACAATACATCTCAAAGTGGTGTATGTAGGTTATAAGCAGGCTTgccactatttatttttatctctttTAATCCATGCTTAATGGAGAAGTTACCGTTACTCAAACAATTTTCCTGTGCCCTATTTAAGAGAGAATATGTATTGGATTGGATTCCACCAGTTCACTCTTAACCTCACCCCCAACTGCATTCTGTCCAACTATTTACCATCCAGCTTGGCATAATCTGTGAAGACATGGTGTTTTAGTAGAATTTacctttaatttgatattttgcaAGTCTCTGTGTCGCTTTTCTAACCTTGTTATGCTTCCCATATCAGTCAGAATAGGATAAAATGACAGTGTACAAAAGGACCACTCAGACAGAGACCCCAGTCATTTAGAGCAGAACAGGGACACAACAGTACTTATAAATGTTATACTAACTACAGAACAtttcttcattattaatttttgGTACTAAGAAAATAGTGAGTTTTGTTGTTAACCAACTGTATCCTAGgtaaattatttcatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50261 lncRNA downstream 53 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 976 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 1757 10737982 ~ 10738597 (-) True G40325
TU50257 lncRNA downstream 11534 10728495 ~ 10728820 (-) True G40323
TU50194 lncRNA downstream 188977 10549657 ~ 10551377 (-) True G40266
TU50295 lncRNA upstream 114650 10857881 ~ 10862312 (-) True AMCG00012856
TU50578 lncRNA upstream 1493998 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 1840280 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1997944 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 2153289 12896520 ~ 12899282 (-) False AMCG00012906
AMCG00012852 mRNA downstream 84221 10644390 ~ 10656133 (-) True AMCG00012852
AMCG00012853 mRNA downstream 95967 10641718 ~ 10644387 (-) True AMCG00012853
AMCG00012854 mRNA downstream 109400 10630026 ~ 10630954 (-) True AMCG00012854
AMCG00012851 mRNA downstream 114079 10612609 ~ 10626275 (-) True AMCG00012851
AMCG00012846 mRNA downstream 165845 10567431 ~ 10574509 (-) True AMCG00012846
AMCG00012857 mRNA upstream 77028 10820259 ~ 10822853 (-) True AMCG00012857
AMCG00012856 mRNA upstream 116571 10859802 ~ 10862322 (-) False AMCG00012856
AMCG00012861 mRNA upstream 199609 10942840 ~ 10979099 (-) True AMCG00012861
AMCG00012867 mRNA upstream 264702 11007933 ~ 11030339 (-) True AMCG00012867
AMCG00012868 mRNA upstream 323919 11067150 ~ 11084825 (-) True AMCG00012868
TU49940 other downstream 1627278 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4284176 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8556191 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8963133 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10200763 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1497165 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2371662 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7136994 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7210832 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7432830 18176061 ~ 18191522 (-) True G41807

Expression Profile