RNA id: AMCG00012859


Basic Information

Item Value
RNA id AMCG00012859
length 1311
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00012859
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10666760 ~ 10685175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCAGCCTCATAACGCATACGTTCAGAACTACAGCCGCAGGAAAGtgcatttcaatgtgaatgAAGGTGACTGCAGGGCTGTATCTGAGTTTGTTTCCCGGAGCTGCACCCCGAAGGCTGAGGACGTGAAGAGCATGTCTTCCTTCAGGATGGCTCTCCTTGTCCAGGTGTGCGCCCTGATCGCATTTTGGGACTTTTTGGAGACGCCAAGCGCACAAACCGACAGCCCCCTCCAGTATTACGACGACGAGAACAtaaTTGATCTGCTGGAAGCCTTGAACATCACCCGGTCAATCAAAGGAGTGACCAAAGCGAAAGGTCTGGAGCCTGGAATTCCGGCCTGGAAGTTCCGTCAGAGAGTTCCACACCTGACCCTTCCACGGGATTTTTCGATCTATTTCCTCAGCACCTTGCAGGGATCCATAGGCTTCCATTTTGTGGCTCAGCAGTCAAAGAACTCCGACGGGACGCTCATCTCCTTTATCTCCCCCACTGCCATGAAAAAGGACGGCCACCCTCTGCTCCAGTTGGTGTCCAGCACCAGATCTAACCAGCTACGGTTGGACTACAGGGCTGTGCACAGTATGGAGCCAGCCAGCATCCTCTTCCCCGGTGGCACACCTTTCTCCAACACCAAATGGGCCCGCGTGGCTCTGAACCTGGAGTCCCACAAGATCTCTCTCTTCATCGACTGCGAGGAGTCTATTGTATTCGAGAAGAACCAAGGGGAAGACGTTCTCAGCCTCATGCTGCCTATAGACCTAGAGATCACGTTCGCAAGCATGCCAGGCAACAAGGCCAGCAAGTTCTTGGGTTATTGGCAAACTGCAGAGGTGTCTACCAGTGGATTCCTTAGACGACCATGGCACTGTGAAAACCTATCAGAAGAGCGCTCTGTAGACCCCAGGCTAGAGAACCTCTATGTAAAGGATCACGGGGTACCTCCAGAGCCCCAGTCTGATGCCAActaccagcagcagcagagtgAACCCGCCCCTCCGGCCGCCCTGCAGTCCCCCAGGCCAGTCCAAGGCAACCAGGAGGACAGGTTGAGAAGACTGGAGGAGACTGTGGAGAACCTCAACATGATGCTCGATATGGTCAAAGTTCAGAACGGTGACCTGCTATCTCGAGTCAAGTACCTGGAGTCCTGTGAGTGTCGGCGTCTGACTTGTTCCTGGGAGGGAAGAGAGATTGAGGAGGGGATCACCTGGCAGATAGATCAGCgctcctgtgtttgtgtgaagggGAGGGTGCAGTGTACAGATTTGGATGCTGGGAAAATGGGTCGATTAACAGCCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50179 lncRNA upstream 124800 10540728 ~ 10541960 (+) True AMCG00012848
TU50128 lncRNA upstream 242389 10375031 ~ 10424371 (+) True G40214
TU50116 lncRNA upstream 494297 10172254 ~ 10172463 (+) True G40203
TU50050 lncRNA upstream 1192540 9473973 ~ 9474220 (+) True G40146
TU50049 lncRNA upstream 1192892 9473545 ~ 9473868 (+) True G40145
TU50237 lncRNA downstream 55257 10740432 ~ 10743104 (+) True G40303
TU50386 lncRNA downstream 418650 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA downstream 471859 11157034 ~ 11159087 (+) True G40436
TU50467 lncRNA downstream 609042 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA downstream 639448 11324623 ~ 11354359 (+) False G40496
AMCG00012849 mRNA upstream 58411 10590198 ~ 10608349 (+) True AMCG00012849
AMCG00012850 mRNA upstream 116694 10546551 ~ 10550066 (+) True AMCG00012850
AMCG00012848 mRNA upstream 125290 10541282 ~ 10541470 (+) False AMCG00012848
AMCG00012844 mRNA upstream 132155 10531979 ~ 10534605 (+) True AMCG00012844
AMCG00012843 mRNA upstream 174283 10471865 ~ 10492477 (+) True AMCG00012843
AMCG00012860 mRNA downstream 1378 10686553 ~ 10689804 (+) True AMCG00012860
AMCG00012855 mRNA downstream 13866 10699041 ~ 10740121 (+) True AMCG00012855
AMCG00012866 mRNA downstream 139845 10825020 ~ 10862300 (+) True AMCG00012866
AMCG00012862 mRNA downstream 189377 10874552 ~ 10882625 (+) True AMCG00012862
AMCG00012863 mRNA downstream 228117 10913292 ~ 10947270 (+) True AMCG00012863
TU50138 other upstream 222313 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 222313 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 222313 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 1553659 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 2830546 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1803400 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1804624 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3743138 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3842987 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3947182 14632357 ~ 14633413 (+) True G41059

Expression Profile