RNA id: AMCG00012860


Basic Information

Item Value
RNA id AMCG00012860
length 2331
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00012860
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10686553 ~ 10689804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGCCACTGTAGATGTAAACTGGAGCCGGTGAGGCGCTGGTTTTACAATGGCCTCTCGAGGGCATGTGAGGAGTTCTTTTACAGTGGCTGTGGTGGAAACGGCAACAATTTCGAGAGCCTGGAGGCTTGCATGCAGCGTTGCTTGCTGGGGGCCTGCTGTTTCCGCGAGCCCAAACTTTCAGGCTCGGCGATAGGATTCGACCAGGAGGGCTATGACAGATATGGGTACAACGCATCCAGTCTGGACCGTaatggaaaaaagagagaggctGCAAACCTGGATCGCTTTGGCCCTGCTTTGTTTGGCCTGAATGGACAAATCATTAGCGGGTTGAGTGACGGGAGGTTATTCGATAAATATGGGTTTGATTGCCAGGGGTATAACCGAGAGGGTTTCCATATGGGCGCTGGCTTTAATCTGACTGGATACAACAGCAAAGGGGAATACGACGGGCGTTCTGAGTTCAGCTCTGATGGGTTTGACCAGCAAGGATTCAACAGGGCTTCCTTTGACTGCAAAGGCCTGGACACACATGGGTTTAACTACCTGGGTTTGTTCGTTGGCTTTACCTACCACTGTGAGTacctgcctctctctcagtgccagCATCGCAGTCAGGACGGTCTCAGCAGGGAAATGGTCAGCTTCTCCCCTGGTAAGCATTGCGCGGACGTGGCCTGCGGAGACGGATGCGGTTGCTCCTTTGAAGGACGCACCTATCGGTTTGGGGAGTCGTTCGAATCTGGCTGTGAAGTCTGTCTGTGTAGCTACACCGGTGCCGTGGAATGTAGTTGCCGGCATCTGACACAGCGCAAGGAAGTGAGAGACATGACCCTGGCAGAGAGGGAGACTTACCAGCAGGCCGTGAAGATGCTTTACTCCAAACGAGGTGTTTGGGAAGACTTTGCTAGAATACGGGCCGAATACGTACCCCAGGCCAATGGACAGTATACCTTTCTCCCTTGGCACCGCTACTTCCTTAAAACGCTAGAGAGAGAGTTGCAGAGAGTGTCCTCCTGCGAAGTTTCCATCCCATACTTCGAATGGACTGTGGATGCGGGTTCTCTGGCGACCTCTGCCATTTGGCAAGCCAATGTCTTTGGCGGCAACGGGGAGCACAAGACAGACTGCGTTTCGCATCACCCTTTTCAGCACAAAACCGGGTGGTCACCTTGCCTCCGCAGGAAGTTCAACACATCAGTGGCTTTGCCTGACGCCATCAACATACAACTCATTCTGGCTGAGGAGGACTTCCATCAGTTCTCCCTTCGCATACAGGCCATCTCAGGGCTCTTCCACCTTTGGGTAGGCGGAAACATGGCATCTTTGTTCAGTGCCTATGATCCTATATTTTGGTCTCATTATGCCTTCATGGATAATCTCTGGATGCAATGGCAGGAGCTCAGACTAGATGGGCTTTCCAGCTACCCGGTGGAATTGAGGTACGTGAAAATGAAACCTTTCGACATTGCTCCAGATGACATAATGCTCTCCCAGCAGCAGCTCTGTACCATGTATGTGCCAGTTACACTTGGCACCCCTTGCAACCTCACCACGTCCCACAAGCTGTCGGGCTTTAACAAAGAAAGGTACAACGGCTTTCGCCCCCCGGGTTACCAGAGAAATGGCGACAACAGAGACTGCCTTAATTGGAGAGCAAGGAATGACCATCGGGGAATGTATGACAAAAAGGGCTTCAACATGCAGGGGTATGACCGCTCTGGATTCGATCAGATGGGCTGGGACCAGTACGGTTTTGGAAGGGATAACTATGACCGGGACTATTTCGATCACGATGGCTATGACATTTCTGGCTACAACCGCTATGGGTTTAACCGATTGAACATTACGTCATTTGGGGTAAGACCGGATGGGACTTTTACTGCTTCTGTACATGGAGAAGATGTAGAAAAACTCTTTGAGAATGGATATAACAAGTATGGCTATGATATGTTTGGTTTCGATCACAATGGATTCGATGTGTTTGGATTCCGCACTGATGGTTATGATAAGGATGGCTGTAACTTTTATTTCCAGGGTCCTCATTACATgagattttatttcttcatacaGCTGCAGATAAAAATGCTTGGACCAGAAATATTATCCAGAATTAAGCGCATTTGTCCTAGTATAACTCCTTTGCCAGAAGACTGGCTGGTGCAGAACTGGATGGCTTTAGATGCTCATGAAAGCCTATCACTGATACGCCTTATTGAGCAGAACTGGGCAATGCAACATCCCTTTGATGGGGATTTCATACCAAACATCTCCTCAGTGAAGGAAGATGGAATTTGGCTTCCAGTCACTCCAGACCTCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50179 lncRNA upstream 144593 10540728 ~ 10541960 (+) True AMCG00012848
TU50128 lncRNA upstream 262182 10375031 ~ 10424371 (+) True G40214
TU50116 lncRNA upstream 514090 10172254 ~ 10172463 (+) True G40203
TU50050 lncRNA upstream 1212333 9473973 ~ 9474220 (+) True G40146
TU50049 lncRNA upstream 1212685 9473545 ~ 9473868 (+) True G40145
TU50237 lncRNA downstream 50628 10740432 ~ 10743104 (+) True G40303
TU50386 lncRNA downstream 414021 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA downstream 467230 11157034 ~ 11159087 (+) True G40436
TU50467 lncRNA downstream 604413 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA downstream 634819 11324623 ~ 11354359 (+) False G40496
AMCG00012859 mRNA upstream 1378 10666760 ~ 10685175 (+) True AMCG00012859
AMCG00012849 mRNA upstream 78204 10590198 ~ 10608349 (+) True AMCG00012849
AMCG00012850 mRNA upstream 136487 10546551 ~ 10550066 (+) True AMCG00012850
AMCG00012848 mRNA upstream 145083 10541282 ~ 10541470 (+) False AMCG00012848
AMCG00012844 mRNA upstream 151948 10531979 ~ 10534605 (+) True AMCG00012844
AMCG00012855 mRNA downstream 9237 10699041 ~ 10740121 (+) True AMCG00012855
AMCG00012866 mRNA downstream 135216 10825020 ~ 10862300 (+) True AMCG00012866
AMCG00012862 mRNA downstream 184748 10874552 ~ 10882625 (+) True AMCG00012862
AMCG00012863 mRNA downstream 223488 10913292 ~ 10947270 (+) True AMCG00012863
AMCG00012865 mRNA downstream 289079 10978883 ~ 10998312 (+) True AMCG00012865
TU50138 other upstream 242106 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 242106 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 242106 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 1573452 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 2850339 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1798771 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1799995 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3738509 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3838358 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3942553 14632357 ~ 14633413 (+) True G41059

Expression Profile