RNA id: AMCG00012863


Basic Information

Item Value
RNA id AMCG00012863
length 6079
RNA type mRNA
GC content 0.48
exon number 21
gene id AMCG00012863
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10913292 ~ 10947270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCATGCATACCACCTAATAAATCCCCCCTTCCACAGATAGAGCATTGTTCTCTGATGATGTACATGAAAATAACGCAGTGTCGTTTCTTTTGCAGGCCCGTAGGAAAGATGTGTTTATTCAGGAGCGATACGGGCGGTTCAGCCTCACTGACCCCTTCCTGGCTCTGCAGCGCGACTACGAGTCtgggggaggagagaaggagaagagagCCATGTGCACCAGCCCCCTCTCTATCCTGGAGGCAGTTATGGCCCATTGCAGGAAGATGCAGGAGAAAATGTCTGCACAGCTGGCAGCCGCCGAAAGCAGGCAGAAAAAGCTGGCTGCCCGGGTCGTGGAGGAGAGTCAGAAGTTTGACGAACTGTCGGCCAAACTGGAAGAGGAAGCCAAGGCAACAGGGCGTCTGGAGGAGGAGCTAACAGTGGAGAAGCAGAAAGGGCAGCAGATGGAGGCCAAGATGGAGAAGCAGCTCTCCGATTTCGACACGGAGCGCGAGCAGTTACGGGCAAAGCTGAGTCGCGAGGAAGCCAGGGCCACCGACCTGAAACTCGAAAGCAGCGATCTGAGGAAGCAGGTGGAACAGCTCCGAACTGCAAAGGAAGCCCAGCAGACTGCTCCTTCGAGCACCGCAGTCAAAACCAGGGCTTCTGTGTCCATTGGTGTGGGAACGGATGTGGTAAACTTGCGGATGGCCTCCTGTCAGACTGACGCATTGCCTACCGCAGAGCACGGTGTTGACGGGGTGAAGAAGTCTCCCCTCACGATACCGGTGAAACCTCCTGCTGCCAATTACAGCAGCTTCGGCCTCCCGAAAGCAGGAGTGGTGGTCAATGCTAGACCTGTTGCTGATCGGGGGATGTCCCATAGCTGTTCAGCACTTCTTCCTGGTTCTTCACAGACTGAAAACGGACCCTCGGGCGGTGACTCACTGCACCCTTCGGGAGTGGCTGCTGCCAGTTTTGTTTCGACACCCATGGGTCACAGTTTACATTCACCCGGTTCTGCTGCCACTTTGCCGACAGGCGTCAGCCCCAGGGTCCAGGCTGCCCGCAACAAGTTTCAGGCTTCCCCTACTGAGCATGACCAAAATGGAACCACCACACAGAGCCCCCCATCCAGAGATGTGTCGCCCACGAACCGAGACAACTTTGCTGCCAAACAGCAGGCCCGACACACCGTCACGCAGGTCCTTTCGAGGTTTACAAGTCCACAGACTGTGAACACCTTGAGGCCAGGTTTGCCCCACTCTGCCTCCGAAGGGGGGCCTTTCCCTGGGCGCATAGGCCACCCTCAAATTGGCCTAAAGTCACCCACTGTAAGCCGAATCGACAGGGGCAATCCTCCGCCCATCCCTCCCAAGAAGCCCGGCCTCTCGCAAACTCCTTCCCCTCCACACCCATCCATAAAGGTGTTAGGTGATGGCAGCAGGTCCCCCAGCACTGGGCTAGGTCTTCCCTCCAAAGCATTGCCACCTCCTTCCAGTTCTCCTCCCGGGATCCGCCTAATAAACGAGGAGGTTCTGTCCAAACCCACAACACCACAGCTACCGCCCAAGCCGACCCTTGATATTGCAGGGGCAGGCACTGGCTGCCCTATCCCAGCCTTGGCCGCTTCTCAGGTGGGTGCCTGCCCCCCCGTCTCCAGGGGGCTGCACCAGTCCGCATGTACAGAGTGTCCCCATGTCATCCCTACCTCCACCACCGCCATTGCCTATAGCTCCTCCATAAACCCTGTTAGTGCTTCATCCTGTAGACCCTGTGACACAGACAGCCCACTGGCAACAGCCTCAGGCTGGTGTCCCTCCCTAGTCCCCTCGCTAACCTGTGGTGGTCCTGTCCCCCTGGCTGGCAGGCCCACCCTCCTCCTCGAAGCTGCTACCCAGGGAAATGTCACTTTATTGTCAATGCTGCTTAACCAAGATCCAATGGATATTAGTCACCTTGATGAAGATGGATATTCTGCCTTGTATTCTGCTGCTAAAAATGGACACACAGACTGTGTTAAGCTGCTGCTGACTACAGGGATGCCCGCTGATGTTCCTGATAAAAACGGATTTACACCTGTACACAACGCTGCTGCCAATGGTCATTTCAGGTGTATTGAACTATTAACTAGCTTTGGTGCTGATGTGAACCGTGCTACTGTGAGAGGACAGACCCCTCTGTATCTGGCCAGTGGTAGTGGGAGCCCCGAGTGTGTGAGACTACTGCTGGCCAAGGGAGCTGACCGCGCTGTGGTCACCAGGGACGGATGGACAGCACTCCATGCAGCTGTTGACTCAGGTCATGCTAGCTGCCTGGTGCTCCTCATGTATTATGATGCATCTGAAGATGGAGTGTCTGCCAGCGAACTGGAGAGGACTTTCGATCCCTCTGACTTCAGCTACATGGAGATCATCCGTACCTGGGGAAAGAGGCCTACGCTGCCTGGCAACCTGATCAACCACGCCAACACAGACGGCTGGACAGCTGCCCACATTGCTGCCTCCAAGGGATTTAAGAATTGCCTTGAGGTTTTGTGTAGCCACAGCAACCAAGACATTGAAAAAAGGGACAAATGCAACCGAACCGTCCATGATGTGGCTACAGATGACTGCAAAGATCTTTTAGAAAACCTGTATTCATACAAACTCCTTGTTAAGATCCACAAAAGCTCAGATGAGGAAATGTGCACAGTGGATATTGTTGAAGATGGACTCACTGTAGGGTTGACAACTGTCCGGAAGCACACTAGCTGGGATGACCTGTACAAAAGCTTGTCCCAGGTTCTTGTGAACCATTGTCACCTTCTCTCGAGTGGATGGGAAGAGAGGAACTCTGGCTTTAATGTTAGTGCCGGAGCTCCCATTGGCCTAAGTGTGAACAGCATCTTTTCAATCCAGATAGATGAGGCCACTTGGTATCCAGGTCAGACACTTGCTCAGACTCCATGGGAGGTGATAAGAAAGAGTCAATGTCAACATCTTACACTAAGACTGAAGGGCTTGTTGGAATCCTCTCTTGATGAGTTGACGTACGCATCTCTGATCCCCCTCCAGTTTCTCCAGAACTACATTCGGCTGGTGGAGCAATATCGTACAGTTATCTTTCATGGGCCAGAAGGAAGTTGCCAGGAATACCTAGCAAACCAGATTTCCCATTGCATAAAGCACAAACAAGAGGCGATGGGGATCGGCTGTGATATTGTAAAACTGGAAGTGGAGGCTGAGTTGTCAAAAGAACAGTTGGTGGAGTCGTTCATCAACTGTGGTTTCCTGGTCCCACTGAAGGAGCAGGCAGGCTGCAGATGTGTGGTGGTTGTGTTGGAGTATCTGGAGAGAGCAGGATCTCTGTCTGAGCTCCTGGAAGACTTTTGTGAAGGCCTGGAGAACAGGGGCTCAGGCAGCACTCTGCTCCTGAATCACGCTCAGAACAGCTCTGGCCTGTATTATTTCCAGGAGAGTAGTTTCTTGATTGGAACTCTTTCCAAGTCTTGCCTCCATGGCCCAGAGTTGCTGATGCAGCAGCATTTCCGCTGGGTTCAGTTGCGCTGGGACTCGGAGCCCCTGCACGGCCTGCTACACCGATACCTCAAGAGAAAGCTCATTCACAAGATGAAGGGACAAATGCCGCCAGTGTCTGACTTGCTGTGTAAAACCGTGGTGTGGATCTGCTCTGTCTGGCAACAGCTCAACTCCTGCTTATCTCGCCTGGGGACCCCAGAGGCGCTGATTGGACCACAGATGTTCTTTTCCTGCCCTGTGGTGCCAGCGCAGCCCCATGCTGTTGTCAAaTGGCTGCTCAGGCTGTGGAACGCAGTCGTGGTGCCCAGGGTGGAGGAAGCGATCGTCTCCCGTGTAACGGTGAAGAGGTCTCCAGTACCGCGCCAAGCTCCCGGCAACAAGAGTCTGAGCCCAGGACAGCAGGCCGTGGTCAAAGCTGCTCTCAGTATCCTGGTCAACAAAGCAGTTGTCCAGAGCTGCCCCCTACCCAGAGCAGACATCGACGGCCATCTGTCGGAGTTCCAGGGCGGGAGCTTCCCTCTGTCGGTGCTTGGCACTTACAAAGGCAGCGGGAAGAAGAGCAGAGAATGTGGCTCCTGGAGGAAAGTGAACACCAGCCCACGCAAGAAGGGGCCCCTCACGCAGGCCTGGAGTGGGGCCAGCACCCTGAGAGAAGGTTCACAGTCAAAGACCGACTTAGACATTCATTTCGGCAGGAAGAAATCAAACTTGCAGCAGTCTGACCATGAGCAGTCAAGATCTCTAGGACTGGACCAGAGATTTTCTCTCTGCTCAGATGATGAGAATGATCTGATGCAGGAACTGCAGAATATGTGCTCCAGTAAATCTGAGCCGGATATCAGCAAGATTGCTCACACCAAGGAGGATTTCATTGTGTTTCCTGGCTCTCCCAGTGGACAAACGCCCTTGAAGTCGGATAATGAAAAAACCACCCAGCCACTATCACAGACGGTTGGTAGCTGTCCATCAAACAGCAATGCACCTGGAACCGGCAGCAGCGACAAAAGGATCAGTGTCTCCGGACAGGCTAGACTGAAATCCCACCTGCCCGTTCCTATGAATAAAAACGCCCCGCGCCCTCACGGCACGCCtcacatcagcagcagcagcagcagcagaagtaCAAGGCAAGTACCACTGAACAATAACTCACCAGAGGAGATTTGGATTCTGCACAGAGACTTgcatgaaaataacaacaagTAGATCTTCTTAAATCTTTATATagacagtttttaatttatctcCATGTTGTAAAGTAGACTTATTACAGCCTTTGTATTTGTACTTGTTAACGTACTTGTTACACTGTATGACATTGTGTATTGGGGACCATAgtttattatatacaaaagtattgaattaaaataagaagaaaaaaagtgcttAACCAGCTTTTGCCTTTCAggtgaaaacattttggatCAAAGCAACAGAATGAGCAATTTTTGctattgaaatattttcaaatataaaagtgTTCTATGTTTAAATAGTTGCAAGgttgttttaaatactgttcCTATTAATCAGGGTTTTACCAAATATGTGTAAATAAGAAATTTAGAAAACTTATATGGTATATAGCTCGGTGTCAGTGGCATTACACTTGtacagtaaataagtaaaaacaaaaacaacacaaaaacaatattgtacatATGTTTGTAATATGGAGAATTGGGTTCATCAATTTTCACTTGTTTCAAAGTGAATGGAATGTGGCAATAAGTTACGTAATTGCAAACacaggacattttctttcaactGTAAgccataataaacattttaattatccaCATCTACCTGAAACGTGGCTGGTGGATACTTTCTGAGCTTGCATGAATTCCCACTCTTACAGTAAGCTGCACATGTTTGGTTTATTTACACGTTctcactttttctttcaaatttgtCGTGTtgaattgtattcaaaatattctGCTTATTCCAACAAACCTGCTCATACTATActtgaaatgtaaaatctgtCCATTAACAGGTGTTCAGAGAAATGTTCTGTTTCCTGCAATCAGTACCATTAAAACTGCACTGTTATTCCAGTATGTGTATTTGCTTcagcacattttgttgttaacaaaaaaaaaaaagacaaaatccaCTTTGCTCCTTCTTATTATGATCTGTTACAGTAACAAACACTGTTGAAATAATcacattattgtgtgtgtggggggggtgaaagtctatcattatatatatatatatatatatatatatatataatttactatgACCTAGAAACTACACTATTcatttacattataaaacaatctatatttttacatgtacaCTTCATGATCTGTGGTAGGCAGTAATGTAGTAAAACAGAGTATTTGAGACACAGGCAGTAGAAAACTGTTCaggttgtttttagtttaaataaaatattgtatgtcACTTTTTTGTACTGATCAATTTCCAGTTACATCAaattgagaggaaaaaaaagttaggtcttaaaaaataaaagcatttatcaGCATCAGAAAGTCTTATTTTCCTTTGTCTGCCCCTCAATGAAAAGCTAATGAATATCTCATTTTACATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50237 lncRNA upstream 170188 10740432 ~ 10743104 (+) True G40303
TU50179 lncRNA upstream 371332 10540728 ~ 10541960 (+) True AMCG00012848
TU50128 lncRNA upstream 488921 10375031 ~ 10424371 (+) True G40214
TU50116 lncRNA upstream 740829 10172254 ~ 10172463 (+) True G40203
TU50050 lncRNA upstream 1439072 9473973 ~ 9474220 (+) True G40146
TU50386 lncRNA downstream 156555 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA downstream 209764 11157034 ~ 11159087 (+) True G40436
TU50467 lncRNA downstream 346947 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA downstream 377353 11324623 ~ 11354359 (+) False G40496
TU50466 lncRNA downstream 403003 11350273 ~ 11354359 (+) False G40496
AMCG00012862 mRNA upstream 30667 10874552 ~ 10882625 (+) True AMCG00012862
AMCG00012866 mRNA upstream 50992 10825020 ~ 10862300 (+) True AMCG00012866
AMCG00012855 mRNA upstream 173171 10699041 ~ 10740121 (+) True AMCG00012855
AMCG00012860 mRNA upstream 223488 10686553 ~ 10689804 (+) True AMCG00012860
AMCG00012859 mRNA upstream 228117 10666760 ~ 10685175 (+) True AMCG00012859
AMCG00012865 mRNA downstream 31613 10978883 ~ 10998312 (+) True AMCG00012865
AMCG00012864 mRNA downstream 52931 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012871 mRNA downstream 264752 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012870 mRNA downstream 296155 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012876 mRNA downstream 482696 11429966 ~ 11433519 (+) True AMCG00012876
TU50138 other upstream 468845 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 468845 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 468845 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 1800191 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3077078 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1541305 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1542529 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3481043 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3580892 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3685087 14632357 ~ 14633413 (+) True G41059

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU215862 True 1082 lncRNA 0.49 3 NC_053126.1 30372104 ~ 30423001 (-)
mexican tetra (Astyanax mexicanus) TU215862 False 1118 lncRNA 0.37 2 NC_035914.1 18164833 ~ 18199663 (-)