RNA id: AMCG00012870


Basic Information

Item Value
RNA id AMCG00012870
length 2030
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00012870
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11243425 ~ 11248941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATAGGGGGCTCTTTTCTGCATTGGGAGGCTTTGTGATTACAGTGTAATCCTTAATGCTCCTGTCGTATCCACAAGTGTTCGCGCTACACCATGGTCTGGCTGCTGCACACTATTGTCTTCCCGTTGAGATGAGGGAGTGGTGGATCCAAGTGGGGCTCCTGACAGTGCCCCTCATCGCAGTGTACCTGCACATCCCCCCGCCTCACCTGTCCCCAGCCCTGCACTCCTGGAAGGCATCAGGGGCCTTCTTCACATTCAAaggaaatgtcattttttacaAAGATTCCTGGGGTGCTGTTGGCAGTTCTGATGTGGTCGTACTTTTACATGGGTTTCCAACGTCCAGTTATGACTGGTACAAGATATGGGATGGGTTGAACATGAGATTCAACCGAGTTATTGCACTGGACTTCCTTGGGTTTGGTTTCAGTGACAAACCTAGGCCTCATCGGTACTCCATCTTTGAGCAGGCCAACATAGTGGAAGGGCTGATGGCTCACCTGGGCCTGATGGAGCAGAAAATCAATCTCCTCTCTCATGACTATGGAGACACGGTGGCTCTGGAGCTGCTGTACAGgagtgAACACAACAGGAGTGGAAACTTGAAGATCAgcagtctctgtctctccaacGGAGAAACGCACTATCCAAGATTCCTGCAGAAGTTACTCAAAGACAGTGGCTTCGTGTCTCCAATACTGACTAGACTTATGAACTTCCTAATTGGAGCTGTGTTTGGTCCGTACACTCAGCCATCAGACGGTGAATACTGGGACATGTGGACAGGGATCAGGTTTAATGATGGAAACCTTGTAATGGACAGTATTTTGCAGTATATAAACCAGAGACTGAAGCATAGAGACCGCTGGGTTGGAGCACTAGCTGCCACCACCATTCCTTTGCATATGATTTATGGACCTCTGGACCCTGTGAACCCTCATCCTCAGTTTATCCAATTATACCAGCAGCTGGTCGAGAGGTCCACAGTGTCCGTTCTTGATGACCATATTAGCCACTATCCCCAGCTGGAGGACCCCACTGGCTTCCTGAACGCCTATCTGAACTTCATCAACTCCTTCTGAACACGGGTCACCACTGCTGGACTCAATACTGCTTTGAGTCACTCCGTTGGGCTACGAGGAAAAACTCTCCTTTCACTGCATTCTGTCACAACTCAGGAAGATCAAGGACTGCAGGTGTTTAGCAGGCAAACATTGGttttgaatatttcattttaaaaatacagcaaggggtaactattaaaaaaatgtatttacatctTTGGGCAATAGGGGTGAGTAATACTTATTTTGATTCAGATGTGATATCCTGTTCCCTGTAAGTGCATCTAGTTTGTATCTCAACTGAGGATAGAAATGAACAACCGGACATTCTTCATTATTGACACATTCTGACAGTGACTTTCAGTGACCGTGGACTACGCTACTATACATTATCTCAACAGCggttttatttgtctttgatAGGTGTCCTGCTTGTATTCATCCTGATACTTGTCACTAGCTGATTTTCATATGTCTTCAGTTTTTGAAAGTTATGAAGGTTTTATAATTTTCAcaaattgatttgaaaaattacaaatcCTCCAACCTATATAAAGACCCAAAGTATTTTTATCTACAGTAAAGATACAATGTGGATGTGtagttttgtattgtgttttcagtAAAGTATTTTTAGCTCTCTCTGAAAACAACCCTTGTTTAATAAGTAGGAATACAATGAAATAAGCAATTGAAAGTATCTGAATTTCATGGACTGAAAATCAAGAAACTGTTTCTAACCAGTTATACAGACAGGTACaattactgaaaatgttatgcaaatgTCATACTTATGGGTTTTTATACAcaagttataattataattaacagtATTGtgatatggcaagccaaataaCTTGTCAGTTTACAGATTGGTAAACTTAGCATTGgatcaaatgcaaaaaaataataataatgattgcaAATAAAACTAGTTTTTCAAAAATTGTACAGTACGTTTTAC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50386 lncRNA upstream 84338 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA upstream 84338 11157034 ~ 11159087 (+) True G40436
TU50237 lncRNA upstream 500321 10740432 ~ 10743104 (+) True G40303
TU50179 lncRNA upstream 701465 10540728 ~ 10541960 (+) True AMCG00012848
TU50128 lncRNA upstream 819054 10375031 ~ 10424371 (+) True G40214
TU50467 lncRNA downstream 45276 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA downstream 75682 11324623 ~ 11354359 (+) False G40496
TU50466 lncRNA downstream 101332 11350273 ~ 11354359 (+) False G40496
TU50469 lncRNA downstream 156064 11405005 ~ 11405356 (+) True G40498
TU50468 lncRNA downstream 217280 11466221 ~ 11468218 (+) True G40497
AMCG00012871 mRNA upstream 10563 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012864 mRNA upstream 236846 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012865 mRNA upstream 245113 10978883 ~ 10998312 (+) True AMCG00012865
AMCG00012863 mRNA upstream 296155 10913292 ~ 10947270 (+) True AMCG00012863
AMCG00012862 mRNA upstream 360800 10874552 ~ 10882625 (+) True AMCG00012862
AMCG00012876 mRNA downstream 181025 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012884 mRNA downstream 383431 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012883 mRNA downstream 536997 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012887 mRNA downstream 714418 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012886 mRNA downstream 772525 12021466 ~ 12053113 (+) True AMCG00012886
TU50138 other upstream 798978 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 798978 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 798978 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2130324 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3407211 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1239634 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1240858 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3179372 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3279221 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3383416 14632357 ~ 14633413 (+) True G41059

Expression Profile