RNA id: AMCG00012872


Basic Information

Item Value
RNA id AMCG00012872
length 3854
RNA type mRNA
GC content 0.36
exon number 9
gene id AMCG00012872
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11233946 ~ 11242870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGGCTCGCTGCAGCTTTTCAGCCAATCGGCGTTTGAAAAGATGTCGGCCAAAAGAAGTCTCGGCAGTGCAGAGtacttgaaaaagaaaatcccccAGAATCCAAAATACCAGTATGTGAAAACCAGGCTTGATACAGACAATATTTCGGTGTTGTCTGAGCCTGACGCAGAGCCTCTCTCTGAAAGGACGAATGGAACTGGGACAACCTCTGTCCAGTTTATAGACAACAACAATGAAGCTGGTGATGCGGGCCTTTCACCGCGGTCAACCCTTCAAAGTGTAATAAGTGGTGTTGGAGAGATGGACTTAGATAAGACTGCAGAGAAGAATGTGAATCAGAAGTCGGCTCCAAGCCCAAGGATTACAGACAGACCGTACCCAGACTGTCCGTACTTGCTACTGGATGTGCGAGGCAGGGATGAATATGACCAGTGTCATGTTATTGGTGcaTATAGTTTTCCTATAGCAACTCTCTCCAGGACGATGAACCCATATACCAAGGAAGTACTGGAATATaaaaacacgTCGGGCAAGATCATCATAGTTTACGATGATGATGAGAGGATTGCCAGCCAGGCGGCCACCACCATGTGTGAAAGAGGATTTGAAAACCTGTTCATGCTTTCAGGAGGGTTAAAGGTCATCGCACAGAAGTTTCCAGAGGGACTGACGACAGGCTCTCTCCCAGCACACTGCCTCCAGTCAACCCCTCCAGTGCCAGGCCGCTCCACCCAGAGACTGCCCTCGTATCCAGCTGAGAATAAGTGGCGATTTTCTGCCGAAGACCTAAACAATATCCAGATTTATTTGGAGGAGATGCTAATCCCTACAGATACTAATAGTCGTCTTAGTCGTATGTCGAGAGGAAGTTCCCAGGTCAAGTCTTCAAGCGCGAGGAGCCGCCAGACCCCCTCAGTAGCTGGGTCAGAGAGCAGCAGATCACAGAGCAGTAGGCCATGGaagtaacaaaatgcaaaaacatatgtattttcaaacataacaaatacaatgtatCCATGTGAGGTAtgaatgttacattatttttggttttgattgaTTCTTGAATAGGGGTTTATGTACAGCAGGATTATCCCTACTCTTGGTCCCGGAGAGCTCCGAATCCAGACAAGACTTGGAAATGGTTAATTCTGATCATTTCAGCTGGTGTTAAATTCAGTAATAAAGAGATAATGTCTTCATTgttattaaactgtaaaacatctCTCCCTATACAGAGTTCCTTGTATTGCCAATATTAAGCTTGTGTCTTTAGAAATTGATGATTCAGGTTGATCTAAACCAAATTTTGGTTCTTCGGGACCAGGTCTGGGGACCAGTGAACCTACACAACACTTTATAAGTCTTTTACTGTTGTTTTGAGCTACATGCGTGTTATAGTGGTTACTTGCTACTTCTTATTTATCAGtttaaaaattagaaaatacTGTATGACCGGAGTGCAAGAGTTGcagtgtaattgtttaaaagttTCTCCTTCTGTTTGTGTTGGATTCTGATCATGTTTTAACTATTGCCTATCCCTTTAATCTGAATTTCAAATATTCCCAAATCTTATTCCACAGTGCCTGTTTAGATCAAACGCTTATTACAGtcttaacatgaataaaatatgaatgttttaggTTACACATCAATCATGGAATAAACATCAGCTTCcgaaatatttaattaattttactgcTGTCTGCTCACATTAAACGCAACGCCATTTTCGTAGTCAGTTTCCTTGATTCGACTTCCAAACTGTAAACatgtgaaattacatttctgtgttctgaacctgtttttaattacacGTATGTTGCACATAATACTAAGCCTGATGAGTAGGACTGTACCTCTGTCATCAAACCCAccacctttttatttctttcgtatttattctttacaaaactgctgTTTACTTCAGTTTGGCTGAAGGATTTCCTCTACCTTAGAATGTTAAGCGTGCCAACTGTAAACATACTTCATctccatcttttaaaaataccGTCTGAGTAATAGTATAATTTCCCCCTTTTGTGAGGTGATATGTACACCAGCTCTTAATCTCCTGCGTCTTGATTATACAGACTCAGTTGTTTCTCATCTATTTTGATTGAAGTATAAGGTTTCACACACGCAAACAGTACTCTTTCAGGCCTACACATTCCTTAAATAACTTTAGATAAGCACAcctgatgtgttttttatttttaaataaaatagtggCTGACAAttgaaaatgataaatatttcatgttatgtattgttttaatagtttttctttgtatGTGCTCATCTGAGGTTATGTGAGCTTTGTGAAACCCTGAAACATGACGCTTAtcataagaaaaagaaaagatttcaaatcaaaacatttggAGAAACTTTAAAAGGGAAACTATTTTTATGTAGTAGTTAGCAATGTGATAATACAAGGGCCtgattaaaacagaaattggTTACAAACGTGGGTAACCAAAAACTACAGACATACTCTGTAGCGGTTTGGCTTTTAATCATATGCTTCTGTTGTCTAATCAGAAGTAAAACCACCATGATGTACATGTTTGTAGCTTGCTATTAGAGGGTggaccattttaaaaataaatctggtcCTGCTTACTGGAAATATTAGTCATTTTACGTTTCAGTACATTCTGTTTTCAGAATAGGATTACAACTTTAGAGtatataaatgttgttttacagtGTAGTCTTTGCTACTGAGTAATATTCATAGACCtgtcatgtatttttttgaGTATGATAGAATATGGTGAGGAATTTAACTAAAACTTAAATTGTAAGGTCAGTTTGCATTCCTGTAAGAACCTCagattcaattaattttaaaacattttgggtGTTGTGGAGCCTGCATGTCTAATCTGATGCATTCAAATGATCTAACGAAGCACAGTAAATTGTTAGTGTAAATGGATGTCCTACATAGAAAGGCATTGTTTGTGACCTCAGACACCCCGAAAATGTAGGGAACTGCAGCCAAACTCTGTGGTCAAGTTATAGTGAAACCTTACAATTCATCCAGTGCTATAATATTATCAAGTTTGTGTATTAATTTGCATACTCAGTATTGATTACAAAAGTATAAATTACAAACCACCTCTGAGTTAAGCATAGGTGGACAATCTAAAATTATGGGTAGATAAAccataatattttaatgtagttaatgaaataatttctgaatctttttatttttcattattgtgaTACCGGAAGcagttcttgtatttatttatatgattttaaacTATTCCTCTGAGctaaaaaacagtaaaagtgtatttaaatttgaatgtatGAGCTCTTATGGAAATCTTTGGTATGAGCTAACCACAAACAACTTTTCTCTTTTGACCATGCATTAAGTGTGTTTCTAAtcagattaattaatatttgtactGCAGAATGCTTGTTTGTAAGCCAGTATCATGGAACTGTTTTCTGGTTatataacaaacacacatttttatgttattctAAGAATAAAAAGGAACAAGGCAATTCTAAagaattaaagaaaagaaaataagtgcctagaggttttgttttcaacGCAATGGTTACAGTGCACCAcaaataaatagagaaaatgttttattttcatgtattggAATtagttaaaacaatgtattgctGTAAAATCCTAAGtatgaaaacacaaatccaTAAATTAAAGCATGTTCTCAAAGTGCATTACCTTATAATTGCCACCTACAAAggttgttctgtattttaagaGTGAAAAACTTTTCTACTACTGCCGATCTATTACTGATTTACTGATTTTTTGCATCTACATTAAAATCTTATTTTGC

Function

GO: NA

KEGG:

id description
K16455 CEP41, TSGA14; centrosomal protein CEP41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50295 lncRNA downstream 371634 10857881 ~ 10862312 (-) True AMCG00012856
TU50262 lncRNA downstream 490715 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 493645 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 494568 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 495349 10737982 ~ 10738597 (-) True G40325
TU50578 lncRNA upstream 994359 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 1340641 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1498305 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 1653650 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 1654384 12897254 ~ 12899282 (-) False AMCG00012906
AMCG00012873 mRNA downstream 5465 11206551 ~ 11228481 (-) True AMCG00012873
AMCG00012875 mRNA downstream 71983 11148292 ~ 11161963 (-) True AMCG00012875
AMCG00012869 mRNA downstream 113176 11096485 ~ 11120770 (-) True AMCG00012869
AMCG00012868 mRNA downstream 149121 11067150 ~ 11084825 (-) True AMCG00012868
AMCG00012867 mRNA downstream 203607 11007933 ~ 11030339 (-) True AMCG00012867
AMCG00012874 mRNA upstream 6248 11249118 ~ 11259131 (-) True AMCG00012874
AMCG00012881 mRNA upstream 20787 11263657 ~ 11264562 (-) True AMCG00012881
AMCG00012880 mRNA upstream 122144 11365014 ~ 11386073 (-) True AMCG00012880
AMCG00012882 mRNA upstream 182463 11425333 ~ 11427587 (-) True AMCG00012882
AMCG00012878 mRNA upstream 193142 11436012 ~ 11462738 (-) True AMCG00012878
TU49940 other downstream 2120870 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4777768 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 9049783 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 9456725 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10694355 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 997526 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 1872023 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 6637355 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 6711193 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 6933191 18176061 ~ 18191522 (-) True G41807

Expression Profile