RNA id: AMCG00012875


Basic Information

Item Value
RNA id AMCG00012875
length 2394
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00012875
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11148292 ~ 11161963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATGAAGTGTTCAATCAAAGTTGCGTCTTGCGTTGCCCTGTTTGATTACAAATAGTTATGCTAGGTGTCTTAGTTTATAAATGCAATGACTTCCAGCTGTGCATCATACACCCTTTATGATGTACTGCGTGCATCCcaaagagaaagaggggggaaaaaagcctgTTTGCGAGCTCGATCCTGGCACTGGGCTCATGCTGTGTCTGCCTCACACGGCGCTGCTTCCCTCACGGGGCGTGGGCCGGCCTGGACAGAGCTTGCGTACCAGCAGCCACAGTGCCAAAGCAGCTACCGCGCACAGCTCACTCTGCTTTTGCACTGTTCACGGGGGAAATGGGTGTCGAAAAGGAGAAACGGGAGACCAGTATTATGATGGACGAGGAGGAGTTCAACAGATCCATCGAGCCGATTCTCCCGAAGAAGGATAAAGTCCGCCCGGCTCCAACCCGGGATCCCCATGACATCAACTCGCACCTGAAGCTGGTTAAATACGGGCTCTACCGGCTGCTGACTGCGCTGCTCGCAGTCCCCCTGGCATTCGTGGCTGGGATTTTGTTCGCAGTCCTGAGCTCGATACATATTTGgatCGTGATGCCATTAGTGAAGAGCTGTATGATGGCGCTGCCCTCTGTTCAGTTTGTCTGGAGGAGTGTGGTGGACATGTTTATTACCCCTGTGTTCCGAAGCATGGCCAAGTGTCTCTCAGCTGTCAATGTCCAGGTGGACTTCGAGGATGTGATCGCGGAACCCGAGGGGACCTACAGCTTTGATGGTGTGTGGAAAGCCAGCTTTACCACCTTCACTGTGACCAAGTACTGGTGCTACCGCCTCCTCACCATGCTAGTGGGCATCCCACTGGCTCTTATCTGGGGAATATACTTCGCCATCCTTTCCTTCATCCACATATGGGCCGTGGTGCCCTGCGTCAAGAGCTACCTGATCGAGATCCAGTGCATCAGCCGAGTCTATTCCATCTGCATCCACACATTCTGCGACCCGCTATTCGAAGCCATGGGGAAAGTCTTCAGCAGCGTCAAGATTTCTATCACCAAagagatttaatttatatatctatgtatctatatagatatataatatttaacaataaagAGGACACTTCGAGCCAAAGCTCCCAAGCTAGTAAGGCTCCAGCACCCTGCTGCCTCCTACAAGCTCACAGTTGCTCTCCAGCAACCATTCTTTTGAACACTGGCACaggaaaagaaatgaaaaaatatacaaataaaatgcctgGCTTGCGTAGATTTTTACCCTATTGTTTATGTCTGCAGGAATGAGTGCTCTCCTTTTTTGGTAGCTTGCCTTTGGAGACTGCTCagtatattaattttttttttaactctctcATTCCATCGTTCTCTGAATGTGTACAATACCGTTCATTTAGTTCTGTCAGATGTCCAGAGGTGTATTTAGAGGAAGAGCTCGTTTAGCGTGCGACACTAGGCAGGCGACTGTTGGTGCTGATGCCTGTGGATTATGCCACCACAGCATTGTGATCTTTCAGATTGGCAGCTTTGAGGagaacttttgtttttcttttccttgttcTTTTTGCCATCCTGCTGGCTGGTGTGCTgcatgctgttgtttttattcatggtGGTTTTAATAAACAGACACATAGCCAACAGAATGTCACCGGACGCTGGATGAAACTTGCACAtcatgcatttcacatttttgactccaagaacattttaaacagctttATGATAACTACCAGGCATAGTTTACAGCATAAGCAATTATGTGacaatgattgttttttgttattgttgttttcccaCAAATTACCCTTGAACTGTATACCCATAGCTAGGTATTAGAATATATGAACACAGTACAATGAAATGCTGAATTTATGGAatggaatgcattttatttttgttgtttccaCGAAAATCATACTAGGcaaatgaattgtatttaataacttcgagtttgtttcagtttctccAGCCTTCTAATATGTATGAATGAGCTAAAACACCCTGAAGTTATTCATTGTAtctataatatgtaatatttttaaatatcccaCAGTCTCCAGTTTTCATGACTTCCCAATTTACTCTAAGATACACACTGGCACAGAGAATCTGTACATGTAAAGGAATTGAAATTTTGCATTCTGAACCATCTAACAGgacaacaatattttatactGGTGATGCAAGCTCAATTTGACATGGTCATGGTTGACTAACTGCTGTCTCTGCTCTATAACACGttgtttgaaagcatttttcacatagaaagttaatatttttgatatataatGCAATTTTCCTTTCCCTGCTTTTACTGTAAAATCTTATATCATGctgaacacattacaaatataaataaattaataacaaaccCA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0048884 neuromast development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0030299 intestinal cholesterol absorption biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K06278 CAV1; caveolin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50295 lncRNA downstream 285980 10857881 ~ 10862312 (-) True AMCG00012856
TU50262 lncRNA downstream 405061 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 407991 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 408914 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 409695 10737982 ~ 10738597 (-) True G40325
TU50578 lncRNA upstream 1075266 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 1421548 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1579212 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 1734557 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 1735291 12897254 ~ 12899282 (-) False AMCG00012906
AMCG00012869 mRNA downstream 27522 11096485 ~ 11120770 (-) True AMCG00012869
AMCG00012868 mRNA downstream 63467 11067150 ~ 11084825 (-) True AMCG00012868
AMCG00012867 mRNA downstream 117953 11007933 ~ 11030339 (-) True AMCG00012867
AMCG00012861 mRNA downstream 169193 10942840 ~ 10979099 (-) True AMCG00012861
AMCG00012856 mRNA downstream 285970 10859802 ~ 10862322 (-) False AMCG00012856
AMCG00012873 mRNA upstream 44588 11206551 ~ 11228481 (-) True AMCG00012873
AMCG00012872 mRNA upstream 71983 11233946 ~ 11242870 (-) True AMCG00012872
AMCG00012874 mRNA upstream 87155 11249118 ~ 11259131 (-) True AMCG00012874
AMCG00012881 mRNA upstream 101694 11263657 ~ 11264562 (-) True AMCG00012881
AMCG00012880 mRNA upstream 203051 11365014 ~ 11386073 (-) True AMCG00012880
TU49940 other downstream 2035216 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4692114 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8964129 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 9371071 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10608701 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1078433 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 1952930 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 6718262 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 6792100 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7014098 18176061 ~ 18191522 (-) True G41807

Expression Profile