RNA id: AMCG00012879


Basic Information

Item Value
RNA id AMCG00012879
length 1404
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00012879
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11597966 ~ 11639025 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAAAAGCAAAGACCCTTCGGGGTTACTCATCTCTGTGATCAGAACACTGTCGAGCAGTGACGATGTTCAGGACCGAGAGACTGAGAAAGGCCGTCTTGAGGAGGCCTATGAGAAGTGCGACCACGATTTGGATGAACAGATTGTGCAGCATTACACAGAGCTGACGACCGCCATCCGCACCTACCAGAGCATCACAGAGCGCATCACCAACTCGCGCAACAAGATCAAACAGGTGAAGGAAAACCTATTGTCCTGCAAGATGCTGCTACACTGCAAACGAGATGAGTTGAGGAAGCTGTGGATCGAAGGCATCGAACACAAGCATGTCCTCAACCTGCTGGATGAGATCGAGAACATCAAGCAAGTGCCCCAAAAACTGGAGAACTGCATGTCGAGCAAGCACTACCTTCACGCCACTGACATGCTGGTCTCTGCTGTAGAGTCTCTTGAAGGTCCCCTCCTGCAAGTGGAAGGCCTTAGTGACTTGCGCTTGGAGCTGCACAGCAAGAAGCTCAACATGCACTTAGTCCTCATAGACGAGCTGCACAGGCACCTTTACATCAAATCCACCAGCCGAGTGGGGAACAAGaacaaggagaaggagaaggccAGGACTGGCGGgtCATCTGGAAAAGAAACCTCCCCAAATCCCTTGATTGATGTCAGCAATCTGTCCACTCCACGCAAGTTCATGGATACCTCACAGTACAGCACTCCTGGGACCCCTGCCATTCGAGAAATAAGCCTGCAGGAGATGAAGGAGGACTTGGACGTGGACCCAGAAGAGAACAGCGCGATGTTCATGGGAATCCTCATTAAAGGTCTGGCCAAATTGAAAAAGATCCCCGAGACCATCAAGGCAATAATCGAGGGCCTCGAGCCACAGCTGAAGCAGATAGTCAAGAGATCCACCACTCAAATAGCGGATCACTCCTATCAGAGGGGAGAGAGTGTGTCTCAGGAGAATCAACCCAGGttgctgctggagctgctggagctgctgttTGACAAGTTCCATGCCGTGGCGGCTGCACACAATGTGGTTCTGGGGCACCTGCAGCAGATTGTTGGGTCCCCTACTCGATCTCAGGAGGGCGTGATCAAACTGTACGACACCGCAGATGTGTCCGCCAAGATACAGACTGTCCTTCAGGTGCTGCTGATGGACTACCTGGATGTGAAGAACACGCGCAGTGCCACCGAGCCCGCAGCCCAGCTCACCTACCACAGCTCCGGTAGCGACTTCGCCGCTTTCTTTGCCAAGAAGAAGCCCCAGAGGCCAAAGCAGTCCTTGTTCAAgtTTGAATCCTCCTCCCATGCCATAAGTATGAGTGCCTATCTGCGGGAACAGAGAAGAGAGCTGTACAGCAAGAGTGGAGAGCTGCAAGGTAAGAGCTAG

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0015031 protein transport biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
K06111 EXOC4, SEC8; exocyst complex component 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50295 lncRNA downstream 735654 10857881 ~ 10862312 (-) True AMCG00012856
TU50262 lncRNA downstream 854735 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 857665 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 858588 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 859369 10737982 ~ 10738597 (-) True G40325
TU50578 lncRNA upstream 598204 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 944486 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1102150 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 1257495 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 1258229 12897254 ~ 12899282 (-) False AMCG00012906
AMCG00012877 mRNA downstream 94432 11484011 ~ 11503534 (-) True AMCG00012877
AMCG00012878 mRNA downstream 135228 11436012 ~ 11462738 (-) True AMCG00012878
AMCG00012882 mRNA downstream 170379 11425333 ~ 11427587 (-) True AMCG00012882
AMCG00012880 mRNA downstream 211893 11365014 ~ 11386073 (-) True AMCG00012880
AMCG00012881 mRNA downstream 333404 11263657 ~ 11264562 (-) True AMCG00012881
AMCG00012888 mRNA upstream 611325 12250350 ~ 12271789 (-) False AMCG00012888
AMCG00012889 mRNA upstream 794469 12433494 ~ 12439926 (-) True AMCG00012889
AMCG00012890 mRNA upstream 850393 12489418 ~ 12493266 (-) True AMCG00012890
AMCG00012891 mRNA upstream 863131 12502156 ~ 12508836 (-) True AMCG00012891
AMCG00012898 mRNA upstream 891369 12530394 ~ 12617383 (-) True AMCG00012898
TU49940 other downstream 2484890 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 5141788 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 9413803 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 9820745 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 11058375 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 601371 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 1475868 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 6241200 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 6315038 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 6537036 18176061 ~ 18191522 (-) True G41807

Expression Profile