RNA id: AMCG00012880


Basic Information

Item Value
RNA id AMCG00012880
length 3126
RNA type mRNA
GC content 0.49
exon number 26
gene id AMCG00012880
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11365014 ~ 11386073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCGCACAGCAGTTACTGCAGACATAGTGTTCCTGGTGGATGGGTCACAAAGTGTTGAGCAGGACAACTTCAACCTGGTTAAGGATTTCATCAGTGGGATCATCAAGTCCTTCACAGAGAACACAGTGGGAGAAGAAGGAATCCGCTTTGGAGTGACAGTGTACAGTGACATCCCAAGGATGAGGATCGCGCTGACGGACTACACCACCATTGAGGAGGTGCTGTCTGCCATCCGTGACCTTCCTTATGACGGGGGAAGCGCTAAAACGGGAGCAGCGCTGAAATACCTAGTTGAATCAGTCTTCAGCTCTGCCATTATCAGAGATGACGCTCCGAAGATAGTCATTTTATTAACCAATGGGAAATCAGCTGACTTAATTGAGGAACCAGCGAAAGCTCTACCGGACAATGGGATTACAGTGTTTGCAGtggGAATTAAAGATGCCGATAAGAAGGAGCTGAAGAAGATAGTGTCTGAACCTTTTGAAGAGCATCTCCTGTTCACAGAGGGCTTCACTCTTCTCGGCAGTCTCATGCCGAAAATCTCCCGTAGACTCTGCTTCACTGCCTCAGAGCCTCCCAGACCTGTGAAAATGATCAAACAGGTGGAAGATAAAATTATTGGACCAAAAGACCTGGTCGTTAATGAACTGAGCTACAATTCTTTGAGACTAACATGGACCCCTGCTACTGGAGCTGTCACTGCATACCAGCTGGTTGTCAGTCCTCTCACTGGGGCAGGGCAGCTGGCTGCAGGGGAAGAGAAACAGATTAATTTGATGGGGGATGTCAGGACGACGGTGGTGACTGACTTGAAACCCAGCACAGAGTATTTGTTCACACTCTATGTTGCGTATCAAGATGCCATCGGAGATTCGACGACGGTCAGGACCAAGACAACTCCTGTGCCCCAGGTAACTAATTTCCGTGTGATTGAAGAAGCGCTGTTTAGTCTGCGGTTGGCATGGACACCACCATTAGGAAAGCTAAATGGCTATAAAATCTTCATTCCCCGATCAAACAGACCTGGACTGACTTATGAGCAGGAACTGAACGGAGACGTTTCATCCCATATTATTGACAATCTGGAGGAGGACAAGAAATATACAATCAGCGTTTATGCTGTTTACCCAGAGGGCCCAAGCGTTCCAGTGTCCACAACTGGCAGAACCTTGAAATTAGTTGCCGTAGAGAGCCTGACTGTCCAGAATGCGACCACAGACACTCTTCAGGCCAGGTGGTCATCAGTAAAGGGCGCCTCAGGATACAGACTGACCTGGTCCTCCTCAGaaggatatatagaaaatgttaaCCTGGGTGAAAGCTACACCTTTTATATGATCCAGGGGCTCCACCCAGGATCTGAGTACACAGTCACGATCAATCCCATCTTTGTGGACATCGAGGGCCCTGTCACTACAGCCAAAGCTAAAACATTGGAGAGCAGCGCAGTGCAGAGTTTAAAGGTTTCTGCAGTCAGTACGAACAGTGCCTTGATATCCTGGAACTCAGTACCTGGGGCAACAGGATACAGACTGGCTTGGGGCCCAACTCCAGAATTTGTAGGTAAAGACCGGCCTCGGCAGCTCGCTCTGAACAGTTCTACAACTGTGTACCAACTGAAGAATCTGGTCCATGACACTGAATATGTGCTGTCCCTCTACGTGCTGTTTGGCAGTGGCAGCATCACTCAGAGCCAGTACTTGGAACGCAGCATCCTTCACTACCGTATTGATGGGCTTCGTCCAGAGACTGTCTATACGGTCAGTATCCATGCTGTGTATGGCAATACAGAGGGACCTGCAATAACCCTTGCACAATACACAGCTTCGGTGACAGACTCTGAGCTGATTCAGACAGTGAAAGATGTGAAGGTGGTAGATGTTGGGGTCAACAACTTCAAAGTCTCCTGGAAGAAAACCCCCAACAAGCACAAAATAGTTCCTGGAACTACAACATTCTTTACCATTCCTGGACTGGAGGAAAGCTCTGCCTACAAGATTCAAGTGTCTGCGGTGGTCGGAGGAAAAGAAGGCAGCCCAGTTCTCCACACAGCCAGGACACtgGACTTgccaaaagtaaaaaaactgaAGGCAATGGAGATCACAGATGACAGTGCTGTACTGAACTGGACAAGTGTTTCTGGGGCATCTGGGTACCTATTAACCTGGAGGCACATTTCAGATTTGGAGACTACTACTGAAGTCCTGGGGCCTGCCTTTACCTCCTTTAAAATCACCAATCTCTTGTATGGCCGGAcGTGCAACTactacagcaacaacagcagcagcaactactactactactactgctgctactactactactactactattgcaCCTCCAACTACAACACCATCTCCAGACACTACTACAACTGCTCTATCTGTGGGAAAGTCAAAGCCGACATTGTCTTCCTTGTGGATGAGTCATGGAGTATAGGCTCCAACAACTTTGTCAAACTGAAGGATTTCATCTTCCGGCTTGTCACCTACTTCCCTGTTGCCGTGGTGCACTACAGCGATGAACCCAGGATAGAGTTCAGACTGAATGACTTTAGGGACCGAAACTCTGTACTGAGAGCATTGAGGGGGGTTCGCTATGGGGGAGGAAACACAAAGACAGGTCGTGGAATTGGCTTCATATTGAAGGAGATTTTCCAGGAGTCTGTGGGAATGAGACTCGATGTGCCACATGTGCTGGTCTTGATTACTGATGGGAGAGCCCAGGATGATGTGTCTCCTGCGTCTAGAGTTGCCCGTGCACTGGGTGTGAAGGTCATAGCAGTGGGTGTTGCCAGTGCCGACATCGAGGAACTGCAGAAGATTGTCACTCCTGCAgactacaaaaatatttattttgccgAAACATTTGACGACTTCCCTTCCATTGAGAGGGAATTTGTTGACAACCTTTGTGGCAGAGCCTTAAAaacagagcagaaggaagcagaGGGTCAAAAGGGAGAAAAGGGTGACATCAATTCACACGGAGGGCTGAGGCTGCAGACGGGCAGTGGGTACGATCCTTTCAACTTCAATTCCAAAGGTGAAAAAGGAGAGAGGATGGTGTTCCTGGGTTGCCGGGGAGACCAGGTCGCACTGGGCCACCTGGTTCAGCTGGAC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50295 lncRNA downstream 502702 10857881 ~ 10862312 (-) True AMCG00012856
TU50262 lncRNA downstream 621783 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 624713 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 625636 10739085 ~ 10739378 (-) True G40326
TU50259 lncRNA downstream 626417 10737982 ~ 10738597 (-) True G40325
TU50578 lncRNA upstream 851156 12237229 ~ 12239457 (-) True G40584
TU50708 lncRNA upstream 1197438 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 1355102 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 1510447 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 1511181 12897254 ~ 12899282 (-) False AMCG00012906
AMCG00012881 mRNA downstream 100452 11263657 ~ 11264562 (-) True AMCG00012881
AMCG00012874 mRNA downstream 105883 11249118 ~ 11259131 (-) True AMCG00012874
AMCG00012872 mRNA downstream 122144 11233946 ~ 11242870 (-) True AMCG00012872
AMCG00012873 mRNA downstream 136533 11206551 ~ 11228481 (-) True AMCG00012873
AMCG00012875 mRNA downstream 203051 11148292 ~ 11161963 (-) True AMCG00012875
AMCG00012882 mRNA upstream 39260 11425333 ~ 11427587 (-) True AMCG00012882
AMCG00012878 mRNA upstream 49939 11436012 ~ 11462738 (-) True AMCG00012878
AMCG00012877 mRNA upstream 97938 11484011 ~ 11503534 (-) True AMCG00012877
AMCG00012879 mRNA upstream 211893 11597966 ~ 11639025 (-) True AMCG00012879
AMCG00012888 mRNA upstream 864277 12250350 ~ 12271789 (-) False AMCG00012888
TU49940 other downstream 2251938 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4908836 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 9180851 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 9587793 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10825423 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 854323 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 1728820 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 6494152 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 6567990 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 6789988 18176061 ~ 18191522 (-) True G41807

Expression Profile