RNA id: AMCG00012883



Basic Information


Item Value
RNA id AMCG00012883
length 846
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00012883
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11785938 ~ 11791546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgctgCTGATAGACTATAAAGAAAATAGGCTGCTAGCCTGTGGGAGCGTTTATCAGGGAATCTGCAAGCTCTTGAGGCTTGAGGACCTTTTCAAGCTTGGGGAGCCATCTCATAAAAAGGAGCACTACCTCTCTGGGGTTAATGACAGTGGCTCTGTGTTTGGAGTGATTGTATCCTACAAGGACTCGGCTGACAAGCTTTTTATTGCCACTGCCGTGGATGGCAAGCCCGAATATTTCCCGACCATCTCCAGTAGGAAATTAACGAGCAACTCCGAGGCTGATGGGATGTTTGCATATGTATTTCATGATGAATTTGTGGCCTCCATGATAAAGATCCCATCTGATACTTTCACGATCATTCCAGACTTCGATATCTACTACATCTATGGCTTCAATAGTGGAaactttgtgtattttctgaCCCTTCAGCCCGAAATGACCAGCCCCACTGGTTCTACCACCAAGGAGCAGGTGTACACTTCCAAACTTGTGCGCCTGTGCAAAGAAGACACAGCCTTTAACTCCTATGTGGAAGTTCCCATTGGCTGTGTGAAAAACGGGATTGAGTATCGCTTACTTCAGGCCGCCTACTTGTCCAAAGCTGGTGCCATCTTAGCCAGTTCACTGGGCATCGATCCCGATGATGATGTTCTTTACACCATCTTCTCAAAAGGTCAAAAACGGAGGACAAAATCTCCAGAGGAATCAGCACTTTGTGTCTTTATGCTGAAGAACATCAATGACCGTATTAAGGATAGACTTCAGTCCTGCTACAAAGGGGAAGGTACACTAGATCTGGCGTGGCTAAAAGTCAAGGATATTCCCTGTAGCAGTGCAGCCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50542 lncRNA upstream 41143 11744596 ~ 11744795 (+) True G40555
TU50468 lncRNA upstream 317720 11466221 ~ 11468218 (+) True G40497
TU50469 lncRNA upstream 380582 11405005 ~ 11405356 (+) True G40498
TU50467 lncRNA upstream 431579 11294217 ~ 11354359 (+) True G40496
TU50562 lncRNA downstream 402939 12194485 ~ 12194686 (+) True G40571
TU50602 lncRNA downstream 559304 12350850 ~ 12351728 (+) True G40604
TU50632 lncRNA downstream 665002 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 700003 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 729917 12521463 ~ 12521819 (+) True G40643
AMCG00012884 mRNA upstream 15670 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012876 mRNA upstream 352419 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012870 mRNA upstream 536997 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012871 mRNA upstream 553076 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012864 mRNA upstream 779359 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012887 mRNA downstream 171813 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012886 mRNA downstream 229920 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012885 mRNA downstream 443821 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012892 mRNA downstream 591512 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012894 mRNA downstream 661693 12453239 ~ 12497997 (+) True AMCG00012894
TU50138 other upstream 1341491 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1341491 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1341491 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2672837 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3949724 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 697029 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 698253 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2636767 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2736616 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2840811 14632357 ~ 14633413 (+) True G41059

Expression Profile