RNA id: AMCG00012884


Basic Information

Item Value
RNA id AMCG00012884
length 2397
RNA type mRNA
GC content 0.53
exon number 27
gene id AMCG00012884
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11632372 ~ 11770268 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaTTGGCTGGAAAAGCCAGGTGACACACTGAAACATACAAGCACCAACGGGGAGCCGAGGAAGATACAGAACGCCTGTACAGGTCTGCAACACCGGCTTACGAAAAGCGAAAAAGTGACTGGTTATGATGGAGTGGACTCTGGGATAGCACCGTCGTTTCAATCATCAAGGGCCACTGGGAAGAATCAAAGACGACGGCACCTCACGAGGCAAAGCAAGGGCCTTGCGTTGCTAATACGACACCTGTCGAGAAAAGCCTGGCCTGGAGTCTTCTACCTGTTTGATCTTGTTGCGCGAGTTGGTGATGCGCTCTGTGATGCTCTGGTAGGTGCGGATGGCGGTCGTCAGCTCTGTGTAATGCTGCACAATCTGTTCATCCAAATCGTGGTCGCACTTCTCATAGGCCTCCTCAAGACGGCCTTTCTCAGTCTCTCGGTCCTGAACATCGTCACTGCTCGACAGTGTTCTGCAAAGAAACAATGGCAATGTGGGAAGGGCAAGCGGTGGGAGAGTGTGCCGTGTGTCCTGATTGTGTCATGCGGCCTTGTGGAGGGCTGCGACATGGGAGGCAACAGTAGCACTCGCCGAGTCTCCTTTGAAGCCGATGAGAATGAAAACATAACGGTGGTGAAGGGCATTAGGCTGTCTGAAAATGTCATCAATCGCATGAGAGATTCCTCCCCAGCTCCTGCCAGGCCACCTCCTCGAGCCCCCGagtctctccctccccccacaGgaagagaaaaaggaaatcatAAAATGCTAAGCATTACAGAGGAAGAATTAAGAAGGAAAATTTCCGAAGAGCTTGAAAATGAGCGAAACAAGAGAGACCCAAAAATGGTGCAGAAATGtccaaACCAACCAGATGCCAGCCGTGCTTCAAGCCAGCCTCCAAAACGCATGGCGCACAGTGGGCTACGGCTGGAACAGGATAAATCTTTTGTTCGTGACGAAATTGGCAAAGCACTGGTGAGGGAGCGTGCGGCCGCGGAGGACAGCAGAGCCATCCTGCGGGAAAGAGTGGCTGCAGAGGACGAGCGTCTGAAAGCCAAGCGCTTCGTGAAGCAGGCAATGCAGCTGAACCCTTTAAAAACAGCCATCATTAAGGCAAGCCACTCGGTTTCAGAGCAGAGAAGACTGTGGGATGAACTCGATAAGCTCATGCAGAAAGGCAACCCTGCTAACCCAGACCCCCCGAAGGGAATCCATCCCAACGTCACAGtgttaatgaaaacaacacatgtGAAGCAACCGGAGATTGAAATTAAGGCCAAACAGCTggaagaaaaagacagagagcTGAGAAAACAAGATATCTATTACAAGGAGCAACTAGCCAGACTGGAAGAGAGGTTGAGGAAGCTCAGCCCACAAACGAGCACCCTTAGACACGAGCTGGCTAGTGCACAATTCTATAAAGTCACAACGGAGCAGTATCAGCAAGCTGTCAATGAGGTCGAAGCCAAGTTCAAGCCTCATGTGACTGCCGAGGGGAAATGCAGAGATGTGAAGCACGCTGCCGAGAGACCCCATGAGAATGCAGCTACAGCCTTCAAGGtacaaagGAGATATGATTACAGTCCCGTGTGTGCTGACCTCCAGGGGCAGATTTTGAAGTGTTACCAAGAGAACCAAGGACAGACCCTGTGCTGCTCCACGCTGGCTAGCCTTTACCTTCAGTGTGTCAGCAGCGCTAAACAGTATCTTTATCTGATCCTGAGCAAAAGCTTATCTCCCTCTTACCATTATAAGGGCGTTATCGATAAATCAAAGGAGGCGGTGGTCCCCTGGCAAAAGGTTTCAAGTGGTCAAGGGCTCTGCGATCTTCTCGATGTCCACGTGATTAACGAACACCAAAGTTTACGCTTTTCTCGCTGCCGGAGGAAACGCATCACTGAGATTGATGTTCCTGTCCCCGCACTGGATTTCCTGAAAGATGCCCCGCAGTTTCTGGTAGACACATTACAAGAGGAAGACGTGCTGTGTGAATCTGAAAGCAAGGCGTATTGTCAGAAATCCATTGCCATCAGTATGCATGAGGAGACCGTGTCCCAGAAGAGCGATGGGCGCACAGCACCTCCGATCTCGGGGAACTTCTTCTGCGGACCACGGCGTGGCATCTTCGGGGAGGGAAACCGCAGCCCGGGCGCTGGGCAGTGTGCGGGCGAGGACGCCGGCGGGCGAGATGCTGTGCGCGGCGTAGATGTGGAAGAAGGACCCGCTGCTCACACGCGTGGATGGCAGATCTGCGAGCCGCCGGCGAGTGCACTGGCTTCGGCAGCGTCTCGACAGATCGCACCTGACACGGAGACGCGGCTGAAGCGCTGGCGCCGCTGGATTTGTTCAGATCTGGGTTTGGACGCGTCTAGATGGTCATTTCGGAGTATCTGA

Function

GO: NA

KEGG:

id description
K17563 CHCHD3; MICOS complex subunit MIC19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50468 lncRNA upstream 164154 11466221 ~ 11468218 (+) True G40497
TU50469 lncRNA upstream 227016 11405005 ~ 11405356 (+) True G40498
TU50467 lncRNA upstream 278013 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA upstream 278013 11324623 ~ 11354359 (+) False G40496
TU50466 lncRNA upstream 278013 11350273 ~ 11354359 (+) False G40496
TU50562 lncRNA downstream 424217 12194485 ~ 12194686 (+) True G40571
TU50602 lncRNA downstream 580582 12350850 ~ 12351728 (+) True G40604
TU50632 lncRNA downstream 686280 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 721281 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 751195 12521463 ~ 12521819 (+) True G40643
AMCG00012876 mRNA upstream 198853 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012870 mRNA upstream 383431 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012871 mRNA upstream 399510 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012864 mRNA upstream 625793 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012865 mRNA upstream 634060 10978883 ~ 10998312 (+) True AMCG00012865
AMCG00012883 mRNA downstream 15670 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012887 mRNA downstream 193091 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012886 mRNA downstream 251198 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012885 mRNA downstream 465099 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012892 mRNA downstream 612790 12383058 ~ 12392105 (+) True AMCG00012892
TU50138 other upstream 1187925 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1187925 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1187925 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2519271 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3796158 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 718307 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 719531 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2658045 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2757894 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2862089 14632357 ~ 14633413 (+) True G41059

Expression Profile