RNA id: AMCG00012885


Basic Information

Item Value
RNA id AMCG00012885
length 3055
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00012885
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12235367 ~ 12242214 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTGTCATTTATGTTTTACAGGGGTTTGGGTGCTCTATGTTtgtgcagatgatactgaaaATTCAATTATAACAGCTGGAACTGCCACAACAGCACCTGCATCtactacaaaaaacatttcagcatcACCAAATACCTTAATGCAGTTTACAACGAAGACACCTACAGTAACTATAAGCAGCATTTCTGCTGAATCCACCACCAACAATACTGCAGAAAGTACATTTGCATCTACAAGGGAAGGCCAATCCAGTACAGCAAAACCACAACTACAGGGTACAACACTGGCTTCAAATACAGCTACAGCCACCAGTAAAGCAAAGGACAATCCTACACCAGTAACTCCTTCAACAACTCCCAATCCAAATTCAACTGATCGAAAGACAGAGACTTCACAGTCAACCTCTTTGGCTCAAGGTCAAGCTGTTGTAGCTACTGCTGTTAAAACTgcagctactactactattactaatcctagtactactattactaatccTAGTACTACTATAACTAAtcctagtactactactactaatcctagtactactactactaatcctagtactactactactaatcctAGTAATACTACAAGTAAtcctagtactactactactaagcCTAATATTGTTATCAATAATCATAGTTCTACTACTAATTATCCTAGTACTGGTAATACTAATCCCAgtactactaatattaatattaataatggtaATGTTAATTATGCTAAACCGACAGTTTCACACCCTTCACCAAAAACAACTTCTGGCAGGCAGTctactgaaacaaaaaatacagaaatatcaTCACACCCTACTTCTGGGAAGTGTGAATCTACCACTATCACAATTATTGAAAAGACATGGAAAGTTCTTCCCCTCCCCGGAGTAATGCTCTCCAAAGACTGTGAACTGAAAGACAATGATAAAGAACATGCTATTGAAGTGTGTAAGGAGCTGAAGAAACAATGTACCTTTGAAGTGAATTGCATCATGAACGTTACAAAAGTAAATGGGACACTACAGTTTTTGTCTGGGGACATTAGAGTCAGCCAAAGTCACCTGGAAAAGATCAGCCAGCAAGTGCAAAAGAGGAatgaagagaaacagaaacagcaacaGGACCTGACACTGATCGCTATTCTTGCGTCTTGCGGCGGACTCCTAATCATAATCGTTGGATTCATTATGTATATTCTCTGCCAACGGAAATCCTACCGAAAGAATCAGCAGCAACTGACTGAAGAGCTGCACACAGTGGAAAATGGCTATCATGACAACCCCACCCTGGAGGTGATGGAGATTCAGCCCGAGATGCAGGAGAAGAAGACCCACATAAACGGGGAATTCAACGACAGCTGGATAGTCCCCATCGACAATCTCATTAAGGACGACCACGATGAGGAAGAAGACACCCACCTGTAAAGCAGTGTGATCGGGGGCACGGTTGTAGGTGTGCAGAATAGACTTCATCACACTTTTGTTTGGCATTCATTTGTCCATTAGAGAATCCGATGTAGACATTCTTGGAAATATTTCAATAAGATTCTCTTtcgttttctttattatttttcttctccgACTTCAATATTTCTCCACCGCATCCTCTGCTGTCGCCACAATACGGGACGACGAAACTCGAAGAAGGTGATGATTAGTGTGACTGGATGAACTTGATCTCTCTTGCATCGCATCCTCAAACAAAACGAATGCCAACACTTACAGCACTGTTACAGACGCCAGTATATGTGATGCATCATACTGCTCTGAGGTGTTTGGCAAGAAGATGCAATTCACACATGACATCACAGACTTTCTGAACAATAGCATACCTTCCCTCTccctattttaaatgtttttcaggtGATGTTTTTTGGAATATATTTgatagaaaatgcatttttacatgaaaGCAGCATTTActtctgtgtatgtatttccaGATACCATTTTCTTCAATCTAACATATCTGTGCACATTGTATCATTACTGTCCACGTCAAAAACCTTGGCCACACATCTTGAACACAGTGATGAGGACTTCTTGTGTAAGCAACACAGGGGATTTTAGTAAGCCatcaacaacaatattaatagaccttaaacatatgtttttaggtttaggtttaggtttgtgtgtgtgcctatTTGTTACACTGGGAAAAAAGACACTAAGTAGACACAGAAATACTAAGCAGCATTGCATGGGCCCAGGGAGTGGTTTGCATCTCACTGCTTTTTTATTGCACTATGCTGCAGAAGTGATGTGTTCCCTCTGCAAAGTGTCGAGTTAGATTTCCAATGGACTGTAAAGCATGGGGTTTCTACTCTACCCTTCACATCACAGATTTACCGTAGAAGGGATGCTGCCTTCTTTCTTAATCTAGACGATCGATATACAATAACGGAGTAGCTTGTGCCTTAGAGACTATCTGCTGACGTCTGCCTCGAGTTGGCCTTCTGGCTTGGCTTGCCCCAGGCCTCTAGCTTTGCATGTGCCTGTGACTAAAGCTGGAATCTCAAAGGGTGTGCATTTCCAAACGTCACGTGTCCACTTCTGTACACGTGCATGTCACGCTTTGGAAATCTGACCAAACACGCCAGGGAACACCGTGGAGACCGGTCCATTTCTCCTTTATTGCACCCCATGTGTTCGGACTACTTGCACgtaaaagacatttaaaactcCTGAAGCCGCAATCCACAGTATTGTACGGAGAAGAcattatatatagaaaaaaaaagattcagatTTTTGTAATCtaacagtttgtatttaaaatattaagagaataccacaacaaaaataaacaatcatattcaaaataaatatttagtattaAATGAAGGATCATTGTAACGTATTTTGTACAGAatagatgaaaatgttttgttttatatatatacgtgtgtgtgtgtgtgtgtgtatatgctaTACTAGCATAAGGACAGAGGTCTGAAACACTGGAATCTGTAGTGAATACTGATTTTGACAAGGACAGGTGTCTTCATAATTTACTTGTATACCAATAAACATTTTTAGCAAAAACACA

Function

GO: NA

KEGG:

id description
K06817 PODXL; podocalyxin-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50562 lncRNA upstream 40681 12194485 ~ 12194686 (+) True G40571
TU50542 lncRNA upstream 490572 11744596 ~ 11744795 (+) True G40555
TU50468 lncRNA upstream 767149 11466221 ~ 11468218 (+) True G40497
TU50469 lncRNA upstream 830011 11405005 ~ 11405356 (+) True G40498
TU50464 lncRNA upstream 881008 11324623 ~ 11354359 (+) False G40496
TU50602 lncRNA downstream 108636 12350850 ~ 12351728 (+) True G40604
TU50632 lncRNA downstream 214334 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 249335 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 279249 12521463 ~ 12521819 (+) True G40643
TU50656 lncRNA downstream 279249 12521463 ~ 12521819 (+) False G40643
AMCG00012886 mRNA upstream 182254 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012887 mRNA upstream 226936 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012883 mRNA upstream 443821 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012884 mRNA upstream 465099 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012876 mRNA upstream 801848 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012892 mRNA downstream 140844 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012894 mRNA downstream 211025 12453239 ~ 12497997 (+) True AMCG00012894
AMCG00012893 mRNA downstream 266770 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012895 mRNA downstream 275714 12517928 ~ 12553070 (+) True AMCG00012895
AMCG00012896 mRNA downstream 351671 12593885 ~ 12609201 (+) True AMCG00012896
TU50138 other upstream 1790920 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1790920 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1790920 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 3122266 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 4399153 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 246361 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 247585 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2186099 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2285948 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2390143 14632357 ~ 14633413 (+) True G41059

Expression Profile