RNA id: AMCG00012888


Basic Information

Item Value
RNA id AMCG00012888
length 2321
RNA type mRNA
GC content 0.47
exon number 17
gene id AMCG00012888
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12240396 ~ 12271789 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCGCTGTTATGTCATCACATTAGAGTGCGCTGTCTCTTTAAGAGTCGATACCCTTCCTTGCACATCACCGATGCTCGTTATATGCTCAACAAGATGGCGGCTGTTCCAGAGAACAGGGTCCTCTCCTACAGTGTCTTTAAATGGAGCTCGTACTCCTCTACGTACCTACCAGAgaatatTTTGGTGGATAAACCTAGCGACCAGTCTTCCAGGTGGTCTTCGGAGAGCAATTACCCCCCCCAGTACTTAATCTTAAAAATGGAAAGGCCCGCTATAGTGCAAAGCGTTACCTTTGGGAAGTATGAAAAAACACATGTCTGCAACCTGAAGAAATTCAAAGTTTTCGGAGGGATGAGTGAGGAAAACATGACTGAACTCTTATCGAGGCAAGTGGGGGGAACGGATCAACTGAAGTTTGGCCTTAAGAATGACTACAACAAAGAGACgtttactttaaaacacaaaattgatGAACAGATGTTCCCCTGCAGATTCATCAAGATAGTACCACTGATGTCCTGGGGGCCCAGTTTCAATTTCAGTATCTGGTATATAGAGCTTCACGGGATCGATGAACCTGAGGTGGTTCAGCCCTGCCTTGACTGGTACAGCAAGTACCGTGAACAGGAAGCCATTCGACTGTGTCTGAAGCACTTCCGGCAGCACAACTACACAGAGGCCTTCGAGTCGCTGCAGAAGAAGACCAAGATTGCGCTGGAGCACCCCATGCTCACAGAGCTGCACGACAAGCTAGTGCTGAAGGGAGACTTCGATGCCTGCGAGGAGCTGATAGACAAAGCTGTGCACGATGGCTTATTTAACCAGTATATTGGCCAGCAGGAGTACAAGCCACGATGGAGTCAGATTATACCCAAAAGCATCAAaggtgatggtgatgataacCGTCCAGGGATGAGGGGAGGACATCAGATGGTGATTGATGTTCAGACAGGTAAGAACAGACCCGTGGTGCTTGCTTGTGGAGCAGCTGAACTCCCTTACCGGCATAGACTTGATACAGAGATCGAACTGCCAGAATATGTCCTGAATGGTCCCAGTGCCAGATCCTGCCATAAGATGTGTATAGACTCCCAGAGGAGACAGATTTACACATTAGGACGTTATTTGGACTCCTCTGTGAGGAATAGCAAGTCTCTAAAAAGCGATTTCTATCGCTATGATATCGACACTAACACATGGACATTACTCAGTGAAGATACCTCAGCGGACGGTGGGCCCAAGCTTGTATTTGATCATCAGATGTGCATggactctgaaaaacacatgATCTACACATTTGGGGGAAGAATACTAACGTGCAATGGGAATGTAGATGACAGTCGGACATCCGATCCCCAGTTCAGCGGGCTTTTTGCATATCATTGCCAATCTAACACTTGGAAGCTCCTGCGGGAGGACTCTTGCAATGCTGGGCCGGAAGATGTCCAGTCCAGGATAGGCCACTGTATGCTCTTCCACACAAAAGACTCTGGCATGGTCCCGATGACTGGCTTTACACAGAGGGCCACCATTGACCCCGAACTGAATGAGATCCACGTTTTGTCTGGGCTCAGCAAGGACAAGGACAAACGGGAAGAAAATGTTAGGAACTCCTTTTGGATTTATGATATTGCCCGCAATAGCTGGTCTTGCGTGTACAAGAATGACCAGTCTGTAAAGGAGACTTCCAGTAAAACCCTGCAGGAGGAGGAGCCGTGCCCCCGCTTTGCTCACCAGCTGGTGTATGATGAGCTGCACAAGgtgCACTATTTATTTGGTGGCAACCCCGGCAAGTCTTGCTCCCCCAAAATGAGGCTGGATGATTTCTGGTCTTTGAAGCTCTGCCGTCCTTCCAAGGAGTACCTCCTCAGACATTGCAAATACCTCATCAGGAAgtacagGTTTGAAGAGAGAGCTCTGACAGAACCTCTCAGtgcactgaaatatttacagaatgACCTCTCTCTAACTGTGGACCACTCGGACCCTGAGGAAACTAAAGAGtttCAGCTCCTGGCCTCTGCCCTTTTCAGATCCAGCTCAGATTTCATCCCCTTAGGGTTTTCAGATGTGGATCAGACTTATGCCCAGCGGACTCAACTGTTTGACACTCTGGTCAACTTCTTCCCTGACAGCATGACTCCTCCTAAAGGCAACCTAGTCGACCTCATCACGCTGTAGCAGAGGCAAGCTCCTGCTGGTTACTCAAGCGGAAAcctttttagattttatttaatagtgactagaaatatttttataaagtgtTCTAGTTCTGAAGTGctggttgatttttttttttttttttccctctctcccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50578 lncRNA downstream 10893 12237229 ~ 12239457 (-) True G40584
TU50295 lncRNA downstream 1388038 10857881 ~ 10862312 (-) True AMCG00012856
TU50262 lncRNA downstream 1507119 10740354 ~ 10743231 (-) True AMCG00012858
TU50261 lncRNA downstream 1510049 10739895 ~ 10740301 (-) True G40327
TU50260 lncRNA downstream 1510972 10739085 ~ 10739378 (-) True G40326
TU50708 lncRNA upstream 311722 12583511 ~ 12583719 (-) True G40684
TU50771 lncRNA upstream 469386 12741175 ~ 12742696 (-) True G40735
TU50787 lncRNA upstream 624731 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 625465 12897254 ~ 12899282 (-) False AMCG00012906
TU50792 lncRNA upstream 635658 12907447 ~ 12911725 (-) True G40747
AMCG00012879 mRNA downstream 611325 11597966 ~ 11639025 (-) True AMCG00012879
AMCG00012877 mRNA downstream 746816 11484011 ~ 11503534 (-) True AMCG00012877
AMCG00012878 mRNA downstream 787612 11436012 ~ 11462738 (-) True AMCG00012878
AMCG00012882 mRNA downstream 822763 11425333 ~ 11427587 (-) True AMCG00012882
AMCG00012880 mRNA downstream 864277 11365014 ~ 11386073 (-) True AMCG00012880
AMCG00012889 mRNA upstream 161705 12433494 ~ 12439926 (-) True AMCG00012889
AMCG00012890 mRNA upstream 217629 12489418 ~ 12493266 (-) True AMCG00012890
AMCG00012891 mRNA upstream 230367 12502156 ~ 12508836 (-) True AMCG00012891
AMCG00012898 mRNA upstream 258605 12530394 ~ 12617383 (-) True AMCG00012898
AMCG00012899 mRNA upstream 379915 12651704 ~ 12669255 (-) True AMCG00012899
TU49940 other downstream 3137274 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 5794172 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 10066187 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 10473129 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 11710759 523747 ~ 539591 (-) True AMCG00012628
TU50830 other upstream 843104 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 5608436 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 5682274 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 5904272 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 5970961 18242750 ~ 18244093 (-) True G41836

Expression Profile