RNA id: AMCG00012892


Basic Information

Item Value
RNA id AMCG00012892
length 3733
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00012892
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12383058 ~ 12392105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTTAGTGTACTTTGGCCCTCCCTGCCACAGAGAAGCAGACCTCCCTGAGACACGCATGAGCAGGGTTACTCCGAAGTAATCCACAGAAGGAAGGGGGGGAAGTGGTGTTTTATTCTTCGCTGGGTTTATCCGTCAAGTGCGATTTCATGTGGGATTACCTGTAATAAAGACCAAAAGGATTTTACAAAGCATGGTGGCTTACGATGAGATCGGGAGCATCGTGCCAATTAAAAGGACTCTGCAAGACTTCCAGAATCAGTGTAGTAAAGAATCCGAGgagCCAAGCACCAAGCGTGTTCGACCTCTTGGCAGGGTGACTTCACTAGCTAACTTAATCTCTCCTGTGAAGAATGGTGCAGTTAGACGCTTTGGGCAGACAATCCAGTCCTTCTCTTTCCGGGGGGAAGGCAAATCCCCGAGTGGTGCCCAGAAGGCCTGCAGTAGAGCCGCATTGCCGACGCCACCAAAGAGGCGGAACAGCACGCTGTGGTCCGAGACGCTGGATGTAAACAAGAAAGGAACTTTTTCTGCTAAGGAAATCAAGAGGCAGGAGACTATACATGAACTGCTTCGAGGGGAACAAGATTTAATCGAAGATCTCAAGTTAGCCCGGAAGgcTTATCATGACCCAATGCTGAAGCTTTGCATCATGTCTGAGGAAGAGCTGACCCAGATCTTTGGGGACCTAGATTCCTACATCCCACTACATGAAGATCTCTTAGCACAGCTTGCAAGAGCCACAGGAACAGATGGGACAGTGGGACAAATTGGTCACATAGTCGTGAACTGGTTGCCGGGGCTCAATGCCTATAAAGACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTCCTGGACCAGAAGAAGCAGGACAGACGTGTGCAGGACTTCCTGCAGCGCTGCCTGGAGTCGCCCTTCAGCCGCAAGCTGGACCTCTGGAGCTTCCTGGACATCCCTCGTAGCCGGCTGGTCAAATACCCCCTGCTGCTGAAAGAGATCCTGAAGCACACGCCCCATGACCACGCTGACGTACACAGCCTGGAGGAAGCGATCTCCATTATCCAAGGAGTCCTCTCTGACATCAACATCAAGAAGGGCGAGTCCGAATGCCAGTATTACATCGATAAACTGGAGTATCTGGACGAGAGGCAGAGGGACCCTCTCATCGAGGTCTGCAAGACCCTGCTCTGCCACGGGGAGCTCAGGAACAAGAGTGGGAATAAACTGTACGTCTTCCTGTTCCAAGAGCTGCTGATACTGACCCGGCCGGTGACCCGCAATGAGCGCCAGTGTTACCAGGTGTACCGGCAGCCAATCCCAGTGCAGGAGCTAATACTGGAAGACCTGCAGGATGGAGACGTCAGGATGGGCGGCTCCTTCAGAGGGGCGTTCACCAATGCCGACAAAGCAAAAAATATCTTCAGGGTGCGATTTCAAGACCCGTCCCACGGCCCATCCCACACCTTACAAGTGAATGACATCTTCCACAAGCAGCAGTGGCTCAATTGCATCCGCTCAGCCATCGCCACCCAGCAGCCGCCCCCATCACCGCCGCGGGAGAGGGAGCTGCCCCAGCTCACGGAGGAAGCCGAGCTCGGGTCGCCTCCAGGCGGGAGCATCCGAATGAAGAGGCGCTCCTCCACCATCTCTGGCATTGTATACATGGAAGCGGATGAAAACACCCCGGCATCGCCTGCTGCCCAGGACCTGGCGGAAGAGACAGAAAACATACCAACTCCGGTGCCCAAGACGCCGTCACCTGTACGCAAAACGAGGAAAGACAAGTCCCACTCGTCggggaagagaaaagaaacgATGGTGTAAATAGTGGCTCGGTGGCCTCGAGAACggactgtatatttataaatgtttgttttgtttgtatacaAGCTGTGTAatgttcatgtgtttttttttagtttgtatgtattatacaaGGCAGCTACTTCAGTGCATTCAGCTCatcctgaaaatgaaaaagattcTGATTGAAAAGCTGGATACGAGAAGGGAGGGTGGATAAAGTATTCTGGGGGTATATTGGTTAATGAGGATTTTCGCTTTGTTTACCAATATACTGTCCATCTGATTTGGTATTACTCCATTGTGTAattttttatagtattttagcaaagttttagattttttttgtatatatattttttttaatattcccaAATGATTACTgtagctttttgttttggtaaaacCAGCACTGTCAATTACTATTACTCTCAAGCATTTGAGTTTGTTCACAGCACTTCTTGCTGCAGAATCCGCAAACCTCAATATTAATGATTGTCTTTAAAATCCTGAGATCAGAAGGGTTTAATTGAACACCCTCTAGATTAATTCCTTATTGTACAGATTTTATCCTGCCAGCCTCCCTAGATTTGCTGTACCAAAAGGATTTTTGTTTCTACTAAATGAAATtgtgcattttctattttttttgtaatgatcaTCAAAAATTTCTACAGAACtagtaatttcattttaaagatagtatttttttactaaaattATAAGCTGAGCCATGGTATCGAACTGCACCTTTGTCCTATATAAAGACAATGGAACACACCCTCCAATGTAGTATCTTGCatgaggatttttttgttgttatggCAAGCATGTAAATGCTTCATAGTGTGAAACTACTGAAGAAGAGCTGCCTTTGTAAATAATTAGAAGATGGAAAGCGCATGTTGTCGAAGGTTTGAGGTCAAGTGATCAGAAAGAAATTGGAAGAGATGCTGAAAGTCTGATGGTTGGGCATATTGAGCAAGGTGTGTACTGTAATTGTCATCTATGACGCAACTTACCTGGTACCTGCTCACATGATTGATTTTCCCCTTTGTTAGaaacagggggtgggggggtggatatGGATACGTattgaaaaaaattgaaagtacAGTGTATGTAGGGAAGATGAGAAGAGGGCAGAACGAAGTGGAATGTGGACTACTGTAAAACAATACTCGAATGGAATGAGTTTGAAGTGGCTGTGCTCTGTATGTGGTGTACAATATCAGATGgcaaagaacaataaaaaaaactgtgtaaGGTTTGCTTCCCACTCCTGACTTGCTTTTTTTGAGTTTCTCTGGACGTATCCTTGAAAGGGAtggaaaataattgttaaaatagACAAGTGTAATTCTAGagcagcttttgttttgttttgtaaactaATGACTACCACCCTCCACTCCTTCAGCCTTTGGGATTGAGATTGCTTCtgcagttttgcttttcaaaatcgGAGAATGAAGTCTGTGAAAGAGCTAAGATCTTTGAAAACCCTTTTTCTACACTCAGTGTAGCACATGGCACTGTTGTTATGCCAAAGAAACTTGATTTCCAAACATGAAAACCACTGTCCAAGTATGTTGGATGACTAACTTAAGATATACTCTAGTAGACTTGAAATGTCTACCTTCATCATAATTGCTAGACGAAAATCAAGAAATGTTCCTAGAAGTGACccgattaaataaatattccttACCCGTGCTGAAAAATGTCCACTGAtctatgaaataaattatttcctaCACTTCAAAGCATGGGGTTTCGTGACGGTTAGTGTTAGTTCAGGCTCACGAGGTGTATTGAAACCTGTTTTTCATCACATTGTTCTGAGATATTACCACGTGTCTAGCGtgggttttaaaaacataaatgtatgaaGTCACAAATTGTTAGATCTTAGCAGGTGGGAAAGGGG

Function

GO:      GO:0005089,GO:0032319

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50602 lncRNA upstream 31330 12350850 ~ 12351728 (+) True G40604
TU50562 lncRNA upstream 188372 12194485 ~ 12194686 (+) True G40571
TU50542 lncRNA upstream 638263 11744596 ~ 11744795 (+) True G40555
TU50468 lncRNA upstream 914840 11466221 ~ 11468218 (+) True G40497
TU50469 lncRNA upstream 977702 11405005 ~ 11405356 (+) True G40498
TU50632 lncRNA downstream 64443 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 99444 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 129358 12521463 ~ 12521819 (+) True G40643
TU50656 lncRNA downstream 129358 12521463 ~ 12521819 (+) False G40643
TU50742 lncRNA downstream 349069 12741174 ~ 12742694 (+) True G40710
AMCG00012885 mRNA upstream 140844 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012886 mRNA upstream 329945 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012887 mRNA upstream 374627 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012883 mRNA upstream 591512 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012884 mRNA upstream 612790 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012894 mRNA downstream 61134 12453239 ~ 12497997 (+) True AMCG00012894
AMCG00012893 mRNA downstream 116879 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012895 mRNA downstream 125823 12517928 ~ 12553070 (+) True AMCG00012895
AMCG00012896 mRNA downstream 201780 12593885 ~ 12609201 (+) True AMCG00012896
AMCG00012897 mRNA downstream 226662 12618767 ~ 12627577 (+) True AMCG00012897
TU50138 other upstream 1938611 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1938611 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1938611 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 3269957 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 4546844 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 96470 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 97694 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2036208 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2136057 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2240252 14632357 ~ 14633413 (+) True G41059

Expression Profile