RNA id: TU50637


Basic Information

Item Value
RNA id TU50637
length 440
RNA type TUCP
GC content 0.47
exon number 2
gene id AMCG00012894
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12453239 ~ 12500402 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaacaacaaaaagtcaGTTGACTCAATGTGACAGCATATCTAAAATAGTTCATGTGAAGCAATGGAATCATGTATAGAGCACATACTTCTGTTCAACCGGCTCCAGCAGGTCCAGAGCAGGCTTGATCTCTTTCTCTGGGTCACTGGTCTCCACTGTAGTGCTCACGATGGCAATGTACTTTCCTTGTGCGGCGACATTGTGAGCATAGGAAATCATGCACACGTAGAACCAGATTTCCTGTTGACTTGGTTCTGTGGAATGATGATCTGGCATGAGTTGGCATCGTTGGTGCTTTTGATGGGGTGGTTCATGATGCAGATGACCCTGATCACCTGACCCACTTTCGTCACCCGGTCACTGATGTAGCTGGGGTCACAGATCAGCTGCTTACAGCGGGCAATCTGGCAGGTATGAACAAGAGGGTCTCCATTAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50632 lncRNA upstream 32069 12456548 ~ 12457730 (+) False AMCG00012894
TU50602 lncRNA upstream 138071 12350850 ~ 12351728 (+) True G40604
TU50562 lncRNA upstream 295113 12194485 ~ 12194686 (+) True G40571
TU50542 lncRNA upstream 745004 11744596 ~ 11744795 (+) True G40555
TU50468 lncRNA upstream 1021581 11466221 ~ 11468218 (+) True G40497
TU50641 lncRNA downstream 1127 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 31041 12521463 ~ 12521819 (+) True G40643
TU50656 lncRNA downstream 31041 12521463 ~ 12521819 (+) False G40643
TU50742 lncRNA downstream 250752 12741174 ~ 12742694 (+) True G40710
TU50828 lncRNA downstream 624471 13114893 ~ 13115253 (+) True G40776
AMCG00012892 mRNA upstream 97694 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012885 mRNA upstream 247585 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012886 mRNA upstream 436686 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012887 mRNA upstream 481368 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012883 mRNA upstream 698253 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012893 mRNA downstream 18562 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012895 mRNA downstream 27506 12517928 ~ 12553070 (+) True AMCG00012895
AMCG00012896 mRNA downstream 103463 12593885 ~ 12609201 (+) True AMCG00012896
AMCG00012897 mRNA downstream 128345 12618767 ~ 12627577 (+) True AMCG00012897
AMCG00012900 mRNA downstream 349819 12840241 ~ 12867057 (+) True AMCG00012900
TU50138 other upstream 2045352 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 2045352 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 2045352 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 3376698 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 4653585 7835346 ~ 7836214 (+) True G39709
TU51090 other downstream 1937891 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2037740 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2141935 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 2640373 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 2986757 15477179 ~ 15479366 (+) True G41264

Expression Profile