RNA id: AMCG00012895


Basic Information

Item Value
RNA id AMCG00012895
length 4600
RNA type mRNA
GC content 0.45
exon number 25
gene id AMCG00012895
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12517928 ~ 12553070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cAACGTCCTTCGCAGCCCTGTTTTGTCACAACGTTTTAACAATCTTTCTCAATGTGGTGATGTGGCCACAACCCAGTTTAATTAACCGGGATGATGATTAAGGAAGGCAACAGCAAACGAGTCCATGTCTTTACCGCATTTCTGCTGGGGACTGTGAACAGCAAGTGACCAAGCTGAACAGTTTTTTCGACATCTACACAAAGACACACCAACTTGCGTAGAGACCAGAGGCAGCATTCAATATGGACAGTCATGATGAACAAAAGCCAAGGCTTTTGAAAAAGCCATATTGGTATCAGAGCTCATCGGGCAGGGAGAATGATGAAGAGGAgccaaaagagaagaaaagagttATGTCATCCTCACCAATGACCATTGAACATAGTTTGGTAGCAGCTCTGTCAGCACCTGCATCTTTCTCTGAATTTGTCTCCCAAAGAAATGAAAATTTGCAGAATCAGGTGCTACTCAAACTGGACACCATTTTGGAAAACCAGGCAGAGCAGCTGTGTCTTCTACGGACACTTGTAAGGAGAAGTGCTGTAAATAATGATCTGGAGGATGTCCTCCCCACCCCAATCAGTGTGACAGAGGAACTTGATGAACTTTGCCACAGGATCAGCACAGATAACAggttcaaaaagaaaatgATATCCTGTCTGTGTTGTCTGGGAGGACGTAATGTTGGAGACAGCATCCGCCGAATGATGAGAAGGCTGGGCACCAATGCGCTGTGGTCAAAATACAGCCTCAAAGGCAGAAAGGGGAAGATGGCTCTTATAGAGCTATCACTGTTCATGGTCTTGACTAGGAAGGCCAAAAGAAGACATCTGAATGCTCATGACTGTGAGGCCCTTTGTCACAGTCCCTCGCTCTCCCAGCCATTCGCTGTCTGTCGCACCAGTAAGGATTTAAACAGGGGGCTCTACCCAAGGACTGCAACCCAGAGAAGGCAGAGAGGGTCAAATGTCCGCTTGAACCAGACTGGCATTACTGAGTACTTCCCTGTCACAGGTCGCTGCAAGGTGAGCCCTCAAAAGATGGCCGAGTTTGTGAAGATGGAGGAGGGTGCTGATGGAGAAGCTGTCACTGAAGAGGAGAAGTGGGATTACGTCCCCGACAACTTCTTCTCGGAAGAATTTGAGGAGGAGTCGGCTGTCGTAGAGCCTGGTCTGAGATGCAGCCGGAAGCGCTCCTCAGACTGTCTGGGGAAGGATTCTCCGGGTGGCGGCTGCAGCGATTGGACTTGGCTGCCCAAGCAAGAGCACATGGCCCCTGGTCACCTTGAACATTGTCCTCCtaagcaggaggaggaggacataCCTGTAGATGTTTTCCCTGATGCCTGTTATGGACTCCTGGGGAGCAGCAATTGTAAACAGGAGCCTTGTGGACACATTACAAACCTACCTGAGGAGATTCTGATGGTTATTTTCCAACACCTTCCTGCCGAGGACCTCTTTCTGCACATCAGCCTGGTCTGCCATTACTGGAGAACCATAGTACTCGACCCATTGTTTGTACCATGGAAAAAGCTCTACTACCAGTACAGGAAAGGAATGCGCCAGGCAGTGGAAAAGGCTAATGCAATCCTCTCGAACAATGGAATCACTGCCCATGAGAACCTGTGTCTGTTGAACCTGCTCGAGTACATGTCAACATATAAACACAGTCGGAACACCCAACCGGACAGAGTGCTCAGTTGTTTGAAAAAGCACCCTTTGTACTCTCAGGCTGAGATGTGTATAAAACTCAGATTACCAGAattagaaaaaaagaacaagCACATAGATGCCTGGGCTGCCTTGACTGTCGTGGTGCTTCTGTCGCACACTGTGAAGGACATCCAGACCCTGGTATCCTGCCTGAGGAGGCCAAGTTCCTCGCTGTCCCTCTCTGAGATCTCTGAGGCACTGTACTGCATTGCAACTCTACTCTTTGCCATGAGGGAGATTGGAATTAACATCAGCACCAGGTTgcattacaatttgttttatgttcttcATCTGCTGGAGAACTGTCCTACCTCCTCTGAAActgtggaaactgaaaataaggAAGAAGATGGAAACTGTGCACCTAACCAGGCTAGCTTTGTTGATTTCAGAGTGACTCCTGTGGCAAAACTTAATCTCACTCATGAACAGCAGCAGATACTGAATCACGATATTGACTCTGGACACGTTGTCAAGATCATTGCATTTGCAGGCACTGGGAAGACATCCACTCTCATAAAATATGCCGAGCAAAGGCCTCAGCTGCGTTTTCTGTATGCTGCTTTTAACAAGTCAGTTGCTGTCCAGGCTTCAAAAGACTTCCCTAAGAATGTGGACTGCAAGACCATCCACTCCTTGGCCTACAGAGAAGTTGGGAGCAAGTATCAGAGAATGAAGAAGCTGAACACCAGTAGACTGAGTCCGTTCACAGTGGCCTGGATTCTGCCAAAGGGCAGGGGCGGCTTTGCAAGAGCCAAGCTTGTCACTCAGACTCTCAATACCTTCTTCGCCTCTGCAGATGACTACATTACCACAGACCATGTGCCACTGCGATACAAAAACACGCATGGGCATAATGTTCCAGTGGAGCCTACCGAAAAACTGAAAATTGTAGATGATTCTGCTAACATCTGGGAGAAgatgaaacaattaaaaccaaCAAGGGAAAATGGTCATTGCATGACTCATGatgGATATTTGAAACTTTGGCAGCTCCAGAGACCTCGTCTTGACAGATATGATGCTATCTTTATTGACGAAGCTCAAGATTGCACTCCagCCATCATGGATATCGTGCTGTCTCAGTCTTGTGGGAAAATCTTGGTCGGAGACCCTCACCAGCAGATCTATACCTTCAGAGGTGCCATCAATGCCTTGCATGAAgtgccccacacacacatttactacCTCACACAGAGCTTTAGATTTGGCCCCGAAATAGCTTACATTGGAGCCACGATACTAGATGTTtgcaaaaaagtgaagaaaactCTGGTTGGTGGAAGACAGGAGGGGAACGTCACAGGACACAAAGAGGGGAAGGTCGCAATCTTATGCCGCTCCAACACAACCGTGTTTGATGAAGCTGTGAGAGTAACGGAAAGCAATCCACCCCCAAAAATTCACATTGTGGGAGGCATTGAACATTTTGGACTTAGAAAGATTTTAGATATCTGGATTCTTCTGCAACCTGAACAAGACCGCAAACAAAAAAACCTAGAAATTGTCGACAAGTTCATCAAGAATTTCTGTCGAGACTCTTTGGGAGGCTACAAGGGACTGAAGAAATACGCTTCTACAGCAGAGGACTGTGAACTGGAGGGAAAGATTGCATTGGTTGAAAAGTACAACATTCGTATCCCGGAGCTGATAAAAAGGATATTCGAGTGCTCTGTGTCCGACCAAGCTTTTGCAGattttatCATGGGAACGGTTCACAAAGCCAAAGGACTGGAATTTGACACTGTGGTAGTCACAGATGACTTCACCAAAATCCCCTGCGCAAGGCACAATCTCCAGCGCCTGCCCAGATTCGGTGATGGGTCCGTTCCTGACGATGAGTGGAACTTGCTGTACGTTGCAGTGACTCGGGCGAGGAAGAGCTTGGTGTTGACCAAGTCTATTGAGAACATCCTCACACTAGCAGGGGAGTACTTCCTGAGGTCAGAACTCACCAGTAACCTCCTTCAGGACGGCCGACTCCCTGACTGCACTGTGCGGGAGTGTCAGAACAGCGTGAGAGGGGAGTCGGTCCTCACAATGCAGAAAATACCTATCAAATATAGTGACAGAGAAGATGCGGGTGGACCTTTTTGTACTACTTGCGTTGAGCAGCGTCTGGGGCCCATGGCATATTTGATTGGCCCACCCGATCTTGTGACATCGATGCCCTATACAGAAGAACACGTGGCCCTCCCAGTAAACATTGCCCTGTTGCTTGCTCTCTTTTGAGGACCATGTCGGTAAAAGCACAGATTTATTACTTGAAATATTTGGACTGAACCCCTTTGGTTTTATgcctttttgtttctgaatgcCACCTTGGCTgagaaactttattttattttacttttatatatgaAATCAAACTGCAAACAAAGCTGTAGCCTCTGCAAATATTGTGTTAACATGTTGAACAGTCATACgatttttcatatatacatatttgtttccgGTATATACTTCGGTACACAAAAATCATGCTCTTCTGGATTTTGGAACTGGAACCCATTATGGCAATGAAAAGGTGTATAAGGTTTTAtacaaaactttatttttgatGTACATACACTTACCTGTGATTCAGTTACCTGTGCTCAAAAATCTTACACTTCcatacaggttttaaaaaaaatacagtttacttACAACTTTTAGCTCTgcttactgttgtgtttttttgtttgttggtttgttttaagaCCCCTTTTTTAATCCATCTTGAGTAATTTATCTTcatccagaaaaaaaatgtattttgtttttgctttacatGCATATGTATGTTCTTGAAGTGTACATGTATAATAATCCATATAATAAACCAGTGCAGTGAGTTTTCTCAGTCTTCTGGGACATGGTACTGTACTTCAGAAAAACCTTAA

Function

GO: NA

KEGG:

id description
K10300 FBXO18; F-box protein, helicase, 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50641 lncRNA upstream 17526 12491549 ~ 12500402 (+) False AMCG00012894
TU50632 lncRNA upstream 60198 12456548 ~ 12457730 (+) False AMCG00012894
TU50602 lncRNA upstream 166200 12350850 ~ 12351728 (+) True G40604
TU50562 lncRNA upstream 323242 12194485 ~ 12194686 (+) True G40571
TU50542 lncRNA upstream 773133 11744596 ~ 11744795 (+) True G40555
TU50742 lncRNA downstream 188104 12741174 ~ 12742694 (+) True G40710
TU50828 lncRNA downstream 561823 13114893 ~ 13115253 (+) True G40776
TU50829 lncRNA downstream 562242 13115312 ~ 13115532 (+) True G40777
TU50840 lncRNA downstream 707574 13260644 ~ 13261179 (+) True G40788
TU50893 lncRNA downstream 1330191 13883261 ~ 13885189 (+) True G40824
AMCG00012893 mRNA upstream 3030 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012894 mRNA upstream 19931 12453239 ~ 12497997 (+) True AMCG00012894
AMCG00012892 mRNA upstream 125823 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012885 mRNA upstream 275714 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012886 mRNA upstream 464815 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012896 mRNA downstream 40815 12593885 ~ 12609201 (+) True AMCG00012896
AMCG00012897 mRNA downstream 65697 12618767 ~ 12627577 (+) True AMCG00012897
AMCG00012900 mRNA downstream 287171 12840241 ~ 12867057 (+) True AMCG00012900
AMCG00012904 mRNA downstream 331419 12884489 ~ 12901327 (+) True AMCG00012904
AMCG00012905 mRNA downstream 353315 12906385 ~ 12916433 (+) True AMCG00012905
TU50637 other upstream 27506 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 2073481 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 2073481 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 2073481 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 3404827 9112460 ~ 9113101 (+) False AMCG00012820
TU51090 other downstream 1875243 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 1975092 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2079287 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 2577725 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 2924109 15477179 ~ 15479366 (+) True G41264

Expression Profile