RNA id: AMCG00012904


Basic Information

Item Value
RNA id AMCG00012904
length 2874
RNA type mRNA
GC content 0.46
exon number 20
gene id AMCG00012904
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12884489 ~ 12901327 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGAGCTGTTCGAAAGTGCTTCTGTCGAGTGTCCTCTGTCACTGCTGGAAGGCAGTCAAGATGAGACACCTTGCCTGCTGTCAGAATCAAATGGAAGGGAAGTTGAATCACGTTTGGGTTCACCCAAACTCATAAACCGATATGAGAAACAAAAGAGAAGTATTTTCACCAGTGAGGAAGAAGCGGAGCTGGagGCGATATCTGGAGATGGCATTAGTCTTCAGAGTTATAAAGTGGAGGCCAGAATCACATCTCACTATGCCGTCACCACCATCAAAAGCAAAGTGGTCAACACAGCCAAGCACCCACAGAGTATTGGGTTCAATGTTGATGTACctaaaaatgctttcattacCAAATTTTCCATGAATGTGGATGGAGTGACCTTTGTTGGTGTTGTGAAGGAAAAGACAGTTGCCAGAAGGCTGTATGCCCAAGCAAGATCAAGAGGAAAGGCTGCTGGGATAGTAAGGACCAACAGTCAGAACATGGAAACATTCAAAGCTGAACTGTTCGTCCCTGCCAGCAGCAAGGTTGAATTTGAGCTGCAGTATCAGGGGCTGATGATGAGGAAATTGTCGGTTTATGAATACGTACTTAACCTCCAACCTGGCAAACTGGTGCCGCAATTCCAGGTTGATGTCTACATTTATGAGCCAATGGGCATTGCCTATGTTGAGGTTCCCAACATCCTTGGAGAACAGTTTGAAGGAATTACTAAAGTAACTCACTCGAAAAATAAGGCCCATGTTTCCTTTAGGCCAACCCTGCAGCAGCAGAGATCGTGTCACAAATGCACCTCTACTGCGCTCAGTGGCCTCTTCATTGTGAAATATGACGTGGTTTGGGAAAACAACGGGGGGAATCTGCAGATTTCCGATGGacattttgtgcatttctttgCCCCATCCAACCTTGCTCCCCTTCCCAAGAACATCGTATTTGTCATTGATGTTAGTGGCTCAATGTGGGGATTAAAGATGAAACAGACAGTACAGGCAATGCAGACTATCTTGGATGACCTCTCCTACAATGACTTCTTCAGTATCATTGACTTCAACCACAATGTCCGCTGCTGGAGTGAAGAGCTGGTTCCTGCGAGTAGCATTCAGGTGGCTGAAGCCAAGAAGTACATCCAGGCAATCCAGCCAAATGGGGGTACTAACATTAATGAAGCACTTCTCCGAGCCATCTATATGTTGTCTAAAGGCCTGACCTATGGTTACATTGACCCTCGCTCAGTCTCAATGATAATTCTAGTGTCTGACGGAGATCCTACCGTAGGTGAGATCAAACTGAGCACCATTCAGAAGAATGTGAAGAGAATCATGCGAGAGGAGTTCTCCCTCTTCTCCCTCGGCATTGGCTTTGATGTAGACTATGACTTCCTGGAGAGAATCGCAATGGAGAACCGTGGAATGGCTCAACGGATTTATGCCAATCAAGATGCTTCTGAGCAGCTGAGGAATTTCTACACTCAAGTGTCTTCTCCATTACTGAGGAAGATAGATATCCAGTTTCCTGATATCGCTGTGTCTAAGGTCACTCAAAACATCTTTGACAAGTACTTCAATGGCTCCGAGCTGGTAGTTGCTGGAAAACTGAACCCTGGATTTCCAGTCTTACAAGGCCTAATCACGGCATCCTCTGCTTGGATGGAAATGACTTTCAACGTGGACGCCAACGTGAATGAGCTTGATGAGGTCCTAGCCTCACAGGCAAATGTCTACTCTGGATTTGCCAAGCAACTGTGGGCCTACATCACAATCAAACAGTTGATGGCCGATCGGGCCCTGGCTCCAAACGCTGTCAAGAAGAGAAAAATCACTCATGAAATCCTGAACCTGGCTTTGGAGCACCAGTTTGTGACCCCAATGACCGCAATGCTGGTGGAGAGTGAAGATGGAACTGAGAGAGTTTTGGCTGACCTTCCTAAAGACCCCAAACAGGCCTGCTGCACAGGCAAGTCATTGCACAGAGCTAGAGAAGAGCATTGGTTAAACACAGTTGATAACGATCCCCACTTCATCATTCATCTGCCGAAGAAAAATATGGACGTCTGTTTCAACATTGACTCTGAACCTGGAGACATTCTTAGCCTCGTCTCTGACTCTGACTCAGGTGTTGTGGTGAATGGTCAACTCAGAGCAGCGAAACaacctgaaaaaaataagatgaagACTTATTTTGGAACAATTGCCATCTATTACAAACCTGGGCACATCAAAGTTAAGATCACCACCGAGCACATATCCATAGAAGATGAGCAGTACACTCATTTCATCTCCTGGAAAGAAACAGGGAACCTGACACAAAATGGAGTTCAGATCACCATCAAGAGAGACTCACACGTTACCATCACTCTTAATGAAAAGGTCTCCTTCATGGTCCTTCTTCACCGTGTGTGGAAGAAGCACCCAGTCAACGTGGACTTCTTGGGCATTTACACCCCTCACACCAACGTGTACTCGCCCAAGGTTCACGGGCTGATCGGCCAGTTTGCCATTGAACCAGAGGTGCAGGTATACAGTCTACATGATGGTTTGGACCCAGGTAAACCAGAGGCCACGATGGACGTCAAAGGAGGAAAACTTGCTGTTACCAGGTACAACACCAATACCTGTTCTGGTTTTCAGGAGCCTCATgGTCACCCTGCTCTTCATTTAACTAACCAGACATGTCTTTACATTTGCAACAGGGGATGGCAGAAAGACTACAGAGCAGACAAAGTGCATGGGTCGGATGTCTACTGCTGGTTTATTCACAACAGTGGAAAGGGATTCATTGATGGAAATTACAAGAATTACATCGTTCCACAGCTCGATAGTTTCCTCCAGCAAGACAAGTTTAAGAGCTTGTGGAATACAACCTCT

Function

GO: NA

KEGG:

id description
K19015 ITIH2, SHAP; inter-alpha-trypsin inhibitor heavy chain H2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50742 lncRNA upstream 141795 12741174 ~ 12742694 (+) True G40710
TU50655 lncRNA upstream 362670 12521463 ~ 12521819 (+) True G40643
TU50656 lncRNA upstream 362670 12521463 ~ 12521819 (+) False G40643
TU50641 lncRNA upstream 384087 12491549 ~ 12500402 (+) False AMCG00012894
TU50632 lncRNA upstream 426759 12456548 ~ 12457730 (+) False AMCG00012894
TU50828 lncRNA downstream 213566 13114893 ~ 13115253 (+) True G40776
TU50829 lncRNA downstream 213985 13115312 ~ 13115532 (+) True G40777
TU50840 lncRNA downstream 359317 13260644 ~ 13261179 (+) True G40788
TU50893 lncRNA downstream 981934 13883261 ~ 13885189 (+) True G40824
TU50918 lncRNA downstream 1085623 13986950 ~ 13988088 (+) True G40846
AMCG00012900 mRNA upstream 17432 12840241 ~ 12867057 (+) True AMCG00012900
AMCG00012897 mRNA upstream 256912 12618767 ~ 12627577 (+) True AMCG00012897
AMCG00012896 mRNA upstream 275288 12593885 ~ 12609201 (+) True AMCG00012896
AMCG00012895 mRNA upstream 331419 12517928 ~ 12553070 (+) True AMCG00012895
AMCG00012893 mRNA upstream 369591 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012905 mRNA downstream 5058 12906385 ~ 12916433 (+) True AMCG00012905
AMCG00012903 mRNA downstream 59021 12960348 ~ 12976980 (+) True AMCG00012903
AMCG00012908 mRNA downstream 93263 12994590 ~ 13014587 (+) True AMCG00012908
AMCG00012910 mRNA downstream 812995 13714322 ~ 13743896 (+) True AMCG00012910
AMCG00012911 mRNA downstream 849822 13751149 ~ 13760598 (+) True AMCG00012911
TU50630 other upstream 348560 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 394067 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 2440042 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 2440042 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 2440042 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 1526986 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 1626835 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 1731030 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 2229468 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 2575852 15477179 ~ 15479366 (+) True G41264

Expression Profile