RNA id: AMCG00012907


Basic Information

Item Value
RNA id AMCG00012907
length 2847
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00012907
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12868899 ~ 12883366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGCGGCTCTTGCGCGCCTGGGCGGGTGGAGGCGGGACCCCGGGCTGCCGGCCAGTCTTCGCACACCTCCGCCGCCGAGCACTTCTCTGGGCAGCTCAGCTTCATCTCCCGAGGAAGCACATGCTCCGGGGCTCACCATGCGGCTGCCGGCGTTATTACTGTGTTTGAGCGGCGCGGTGCTGGGCCGGTGCGACTCTGACGTCGTCGTCAACCCGCAGCCGGCGGCGgCTGCTCCCAGAGTCGCAAGACAGGCTGCCTCTCTGCAGAAAAAGGAGAGTAAGCCTCACATTCAGGACTTCTCAGTGAAAACCACGATTATCTCTCGGTATGCTTTCACTGCCGTGTCCTGCACCATGTTCAACAGACTGTCCACGGCCAAGGAGGGTGTCTTCCAGATGCAGATCGCAGCTGCTGCCTTTGTCTCCAATTTGACTGTgaTCATTGGAGGGAGAGTCTACCCAAGTGAGGtgaaagtgaaagagaaaaaacatgacaagAAGAATGGAGATACAACACCAGGCAAAGATGATAAAATGGGAAATAGTGAAAGTGAGGTGGAGACCTTTCGCATAGCTGCCAACATCCCTGGAAAAAATAAGGCCATTTTCCTTCTGACCTACGAGGAGTTACTGCAGAGACGTCTGGGAAAATACGAACATGTGACCAGTGTGCGACCACTTCAATTGGTCAGCAAGCTGTCAGTAGAAGTGACGATATTGGAGCATTCTGGCATAACAGGCCTTGAAGTCCTGCCACTGAGAAATGCTAAGAATACTGCTACTAGTAAACCCACAGCTCCTATATCAACTGTTATTCAGCAGAATAAGACAACATGCAAAGTTACATTCAGACCAAGCCTTGTGCAGCAAGCCAGGATAGCAACGAATGGCATCCTGGGGGATTTTGTTGTACGATATGATGTAGAGAGGGAGCTGGGGATTGGCGACTTTCAGGTCTTAAATGGATACTTTGTGCACTACTTTGCACCAAAAGACCTACCAGCTGTACGtaagaatattgtttttgttattgacaCCAGCGCTTCTATGACTAAGGAAGCTCTCTTCACCATCCTCAAAGATCTTCGTCCACAAGACCACTTTAATTTTGTGAGTTTCTCTAGTAAAATTAAAGTCTGGCAGCCAGGACAGCTAGTGCCTGTAACACCAAACAACATCCGTGATGCCAAGAAATTCATCTACCTTTTGAACCCCAGTAGAGGCACTAATATAGATGGAGCCATCCAATCTGGCTCTTCCTTACTGAGTGACTACCTGGCCAGCGACAAGAGTGCTCAGAACAGCGTGTCTCTCATCATCTTCCTGACCGATGGCCGTCCCACAGTGGGGGTGACCCAGTCTCCCAGCATCCTTAGCAACACCAAGGGAGCAGTGCAAGAAAAGTTCTGCATCTTCACCATAGGCATCGGCAATGACGTGGACTACAGGCTGCTGGAACACATGGCCCTGGAAAACTGTGGCGTGGGATACACAGAGGATGCCGTGCAATACGTAACGCAGAACTTCTTCACCAATTATTTTAACGGGTCCGAAATTGTCGTCGCCGGCAAGCTAATGGATCAGAACACGGACTCCCTGCATGTCCAGATCACCGCCAGCAACAGTGACAAGAGTATCATGCTGGAGTCTGAGGTGCCcgtgaaagagaaagagagagaagcagagcaAGTCATAAAGGCCTTGGATAATACGGCTGTGGAGAAGGATTACATCGAGAGACTGTGGGGCTTCATGAGCATCAAAGAAACACTCAAATCTCGTATGCGGAGCACGGGCAGCAAGCAGAGGGAGGAGCTCTCCGAGAAGGCCACGAACCTGTCCTTAAACTACCACTTCCTGTCCCCTCTGACCTCAATGGTCCTGGAGAAGCCTGACGTTCAAATGGACGGGGTGACGGAGGAAGTTCCAGAGCCATCGGAAGAAACTTACAGAGAGAAACCCCAGAGCCTACACAGGAGCACTGAGCAGCCAGGTTCGACGGGTAAAAAGTCTGGGAAGAAAATGTTAACCTTTTCAAAAACGTCAGCTGATGGTGACCCACACTTTGTAGTTGATTTTCCTCTGAATAAGATAGCAGTGTGTTTTAACATCAACGGGGAGCCAGGAGACATACTCAGGCTGGTGTCTGATCATAAAAACTCAGGTGTTACGGCGAATGGGAAATTAATCGGGACCCCAGCGCCGGTCAACAGCCACAAGAAACAACGCACATACTTCAGCACCATCACTATCATGGTGAACAAACCCAGGCGCTCCTATATCGAGATAACCCCTCGCAAGGTCATACTGGACGGCAGGGACAGGATGGTGCTGCCTTGTGATAAGACGCTGGCAGTGGAAAGTGACGGACTGGCCGTGTCCATCGCTGGGAAGTCCAATATCACAGTGACGGTGCAGGGATCCATCAGCTTTGTCATTCTGCTCCATCAGTACAAGAATCCGGCCCCCTACCAGAAGGACCACCTGGGCTTCTATATCGCCAACAGTAAGGGCCTGTCACATGACTCGCATGGACTCTTAGGTCAGTTCCTCTATCAGGACGTGAACCTCATCCATTTGCTTGTGAATGACACAAATGCTATGATGTCTGAAAGCCTGCAGGATGGGACACAGGGGCACTCGGAGCCCCTGACCCCAAGCACTGCCCTGAAGATTAAGGACAGATTGGTCCCAGTAGTGAAAAAGCAGAGGAAAATATACAGTGGACAGCACAGGGTGGACTGCTGGTTTGTGAAGAACAATGCAGCTAAACTGATCGACGGGACGTACAAGGACTATGTTGTGTCACACCTCTTTGATACTAACACATCAAACGCACTTTAA

Function

GO: NA

KEGG:

id description
K24515 ITIH5; inter-alpha-trypsin inhibitor heavy chain H5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50771 lncRNA downstream 126203 12741175 ~ 12742696 (-) True G40735
TU50708 lncRNA downstream 285180 12583511 ~ 12583719 (-) True G40684
TU50578 lncRNA downstream 629442 12237229 ~ 12239457 (-) True G40584
TU50295 lncRNA downstream 2006587 10857881 ~ 10862312 (-) True AMCG00012856
TU50262 lncRNA downstream 2125668 10740354 ~ 10743231 (-) True AMCG00012858
TU50787 lncRNA upstream 13154 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA upstream 13888 12897254 ~ 12899282 (-) False AMCG00012906
TU50792 lncRNA upstream 24081 12907447 ~ 12911725 (-) True G40747
TU50794 lncRNA upstream 24081 12907447 ~ 12911725 (-) False G40747
TU50850 lncRNA upstream 585939 13469305 ~ 13558179 (-) True G40798
AMCG00012902 mRNA downstream 55373 12806939 ~ 12813526 (-) True AMCG00012902
AMCG00012901 mRNA downstream 85722 12742908 ~ 12783177 (-) True AMCG00012901
AMCG00012899 mRNA downstream 199644 12651704 ~ 12669255 (-) True AMCG00012899
AMCG00012898 mRNA downstream 251516 12530394 ~ 12617383 (-) True AMCG00012898
AMCG00012891 mRNA downstream 360063 12502156 ~ 12508836 (-) True AMCG00012891
AMCG00012906 mRNA upstream 14492 12897858 ~ 12906333 (-) True AMCG00012906
AMCG00012917 mRNA upstream 1026305 13909671 ~ 13939577 (-) True AMCG00012917
AMCG00012919 mRNA upstream 1090101 13973467 ~ 13975695 (-) True AMCG00012919
AMCG00012925 mRNA upstream 1236253 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012924 mRNA upstream 1292014 14175380 ~ 14180940 (-) True AMCG00012924
TU50581 other downstream 615456 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 3755823 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 6412721 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 10684736 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 11091678 1776854 ~ 1777221 (-) True G38458
TU50830 other upstream 231527 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 4996859 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 5070697 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 5292695 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 5359384 18242750 ~ 18244093 (-) True G41836

Expression Profile