RNA id: AMCG00012909


Basic Information

Item Value
RNA id AMCG00012909
length 4118
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00012909
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13773790 ~ 13785856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGGACAACGGCAAACTCCAATGCAGGGGCCGCCATGAACTCCCTCACATCCCTGGGAACTCTGCAGGGGCTGGCCGGAGCCACAGTGGggttaaacaatataaatgcacTAGCAGGTAGCGTCAACAGTATGGCGGCGCTTAATGGAGGACTTGGTGCCACAGGGCTGACAAACGGGACAGCTGGCACTATGGATGCCCTGAGCCAGGCCTATTCTGGGATCCAGCAGTACGCTGCAGCGGCCTTGCCCACCCTGTACAGCCAGAGCCTGCTCCAGCAGCAGAGCGCCGCGGGCAGCCAGAAAGAGGGGCCAGAGGGTGCGAACCTGTTCATTTACCACCTTCCCCAGGAGTTCGGAGACCAGGATATCCTGCAGATGTTCATGCCCTTTGGAAATGTAGTCTCGGCTAAAGTCTTCATTGACAAACAGACCAATCTGAGCAAATGCTTCGGTTTTGTTAGCTACGACAATCCAGTCTCTGCGCAGGCCGCCATCCAGGCCATGAACGGCTTCCAGATCGGCATGAAGCGCCTGAAAGTGCAGCTGAAGCGGTCCAAGAATGACAGCAAACCCTACTGATCTTAGCACTAGACGCTTACAGCTCTTATGTTAGCATTGCTAGGACATCTCCATGCCCGTTAGTTCATCGTTTGCCTAGCATGTCCCTGTGGcgtccaaaaaacaaaaagtttcaTCGTCCCGTCATTGTTTCTGATGTCTTTCTGACCTCACATCATAACTTGGTCCTCCTACTGACCTTTGAACCTAGCTTGACCTATGAATTTGCATGTGACCTCATTTAGCTTTGAATATTGGGAAGTCAATGTGAAAGCATAGCCGCATTCATACAAGACTGAatctttaaacacattaaacaaaaaatatatatatatagaaagaggaaaaaaaaacctgtggcaaaatgttttctgtttgttttttcttttcttccttctttcaTTAAAGCAAACTTGAAAGTATTATACAGGGATTGGCATTCTGCCAGGTTGCTGGTACCAATAGCAATATGAGTCCAGGATCATGGAATGTCGGTTTCTAAGTTAAATAGACTACTTCCAAACAGTTTGAAAAAACTGTCTGATTAATATAGAATCTCTCTTAGAGCTCTGtaatagtttttacatttttcaggcAGTGTAAAGTTTTTTGATAAGGCCATTTTAAGTGGCTCACTTTCtcattaaaactatatatagaaCCACTTTTTTCTAGAATAGTTTAAGGAAAAAAGATTTGCCCTGTTTTGGGGGAAAATGCTACCTACGTGTCACCTTTTGCTGAACTGATTCACAGTTAGACAATCCGTGGTTAAATGCACATGAAATGACctatattttatactgtttaaatgtatagagAAAAAGTACGTGTGAACCGTGTTAACGTTGGTGCTTTTTGTGGATTAAGTTGTGGTATCATCACGAGTCTTAAGGTCTTaagtgtttcatgtttttaaggACAAGACTAAAAATCGGTTTACTTGAACAACAGACAAAGCCTTTCATATTCTTTTCTTTTACGAGTCCTATTTGCTAAATTTCTtgttgggtaaaaaaaaaatccaaaaaaaaaaaagtgttggcTTGTAAAGCATTGATGTcataatttttatttctattgtgGGAAATGATAtagatgtgttttattgttcagcaaaatgtgatttttttttctttttttttttttcttttaaagaaaaacctaAATCAGTGGAATTTAGTGCCAAATTCCAAAGGTACTTCCTGCCTAGAGCTTCAgtgtgtttcttgtgaaaagttATTTGATAACATGGGTATTTTATTACTTAGTGTTTTGTATGAATCcctcatatttaaaaatatagatttaaaaaaagtttgttaaCTTGCTATTCTGTGGTCTTGTTGCCTGAAACTGTTAATGTTTGTTATTTCTCTTTTCGCTTTTTTGTAAGATGTAAAAGTGCCCATGTTTCACTTGTTTCAACATCACTCACCAGTGCTGTGAAAAGCAAACCTCACAATCGACTTTCTTTTTACATGATGTATGAAAACCCCTGAAGGTGAGAATCTCCGCAGCCATGTTCTTCATTCTTCCCAAAGTATCCGCAAAACCGGCCCAACGCACACACCTACTCACTCTGCTGCAGGAGTTCTGTGTTCAGTCACCAGCTGGTGAAGAGCCAGAGGGCCACAGCCATAGCCTCGATCGTTCCACCATCTTAGACGTTACGGGCCAGCTTCCTCACGCaacacacttttgtttgtttgtggtttcgaTTTTTACTGGATGACCAGAAAGTCCCTGCAGTTTTTAGTATGATTTAGATGTTTTCTGTTTAGAGTAAATGTTGGAAATGGTATCTGCAAAACATGCAGACACCTgtccactcacacacactatttCTAATGTGTATTGTAAGCAGAACAAGGCAAATACAGCTGCTTGTTAATTACTGCAGGTGCACAGGGACTTTTCAATCACCCTGCGTTTGTCACATTATACCCATAGCTGCTCTTACTCCAGTAAGGCTTGTTCTATTGCGCCCCACCTAACAATATCGACAATACTACATTCAGAGACAGATGTTTTCTAGAGCCAAGCAGGAGCATAAACATCAGCATGTAGGAATCGGTTGCCTTTTTAAACGCTTGGGATGCTGCTGTATCAAGATGAAGTTAAGGACAGTTCCAGATCCTTTCTTCCTTTAAGTTCAGGAAGCAGGACGCAGTGGGGATGCGCTTCAGtagaaactaaaaatacattatttcaaaaggTCTGGataattcatattaacattGGTTGATTTAAAACTAATCAGGCAGTGAGTATAACATTTCTTAATAcatctttaaatatacatacatatatatcacaaaCTGATCTTTTTGTGCTGAAACAAATTGTAATGTTCAGTCTTAGATGTTCGTGGTTTGCCAGTTAAGTGTAGTTGCCACTGCCTTGTGTATGTAGCTGCACAGAAGGAGGTTGAATTtgattattagtttattttggcaATTGTTTGGTAACTATCCCTTATCAATGATTGATACGTTTCTAATAATTCACCAGTGTTCATGAGTTCATGTGTTGCAGTGTTTAAGCGGCATCCTAAACCATGGCATCGTGTTCATAAACATAACACCTGAGATGAACTGTGAGGACCTGGAGATTCTAACACAGGGTATAACCGTACGTTTTCTGTCTTTATATGTGAATTTGCAGCCCGTGCTTACTGATGTTTGGCCCTTTTTGTTGTTAGTGGTAATTTATGGACAAAGTACTGCCATTTTTACACACTTGCCACCGCCTTAAACGAGGGTCATTTGTTTTGCGTTTTTAGATCTGTCGAGATCGTGTTCTTTGAAGCACATATGATATTGATCAGTTCATCAGCCTACTTTGTGCTTgctttataacaaaaaaaagtttctctGAAAGTTATTCCCTCTCCTGGGACCAGCCagcataaatgcatttaaagcatTTGGATTTCCATCTGTTCACTATATTGTAGATGCATTGCTGAATAACTTAAACAACAGCATGAATCAAAGGATGGTAACTTGTTGGAGATGGTAACCAACGATTTAAGCAGATGCTGTTATACCAgagaatgtttaatatatttttacattatgaaataaatcacttatttagagaaaaaaaaaagttgaaaataattgaattggaCCTCCATATTGAAGCTGTTAACTCTTACGTAACTGTGAAAATAGTCTGTTTGATGAAGCACAATCAAGTATTACGGTTTCGGCATGTGAAGCCTCTGAATTGAGTAGGGACAGACATTCACAATCTCTATAATTAAGATATGAGTAGCAGGAAATCAGAAACTCCTTCAGCAAAGTGACTGGGAGCTCCAGCATTGCACCACAAACCCATCAATTCACCGTGAATAACCAAGGCAGAACATTTACAGGAGACTATTTAATAATGTCTGGGAATTCACgtggatttttttaatgtactgtaaataagGGCACACAAAGCAGTCATCAAGAccaatgtttctctttttgtaagTTTCTCAAGGGCACTGTCTGCAGGTacaaacttaatttattaaggtttaggattttaaatgtatgtaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50840 lncRNA upstream 512611 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 658258 13115312 ~ 13115532 (+) True G40777
TU50828 lncRNA upstream 658537 13114893 ~ 13115253 (+) True G40776
TU50742 lncRNA upstream 1031096 12741174 ~ 12742694 (+) True G40710
TU50656 lncRNA upstream 1251971 12521463 ~ 12521819 (+) False G40643
TU50893 lncRNA downstream 97405 13883261 ~ 13885189 (+) True G40824
TU50918 lncRNA downstream 201094 13986950 ~ 13988088 (+) True G40846
TU50999 lncRNA downstream 399384 14185240 ~ 14186136 (+) True G40920
TU51050 lncRNA downstream 555090 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 609720 14395576 ~ 14395899 (+) True G40986
AMCG00012911 mRNA upstream 13192 13751149 ~ 13760598 (+) True AMCG00012911
AMCG00012910 mRNA upstream 29894 13714322 ~ 13743896 (+) True AMCG00012910
AMCG00012908 mRNA upstream 759203 12994590 ~ 13014587 (+) True AMCG00012908
AMCG00012903 mRNA upstream 796810 12960348 ~ 12976980 (+) True AMCG00012903
AMCG00012905 mRNA upstream 857357 12906385 ~ 12916433 (+) True AMCG00012905
AMCG00012912 mRNA downstream 77951 13863807 ~ 13882206 (+) True AMCG00012912
AMCG00012916 mRNA downstream 103852 13889708 ~ 13891565 (+) True AMCG00012916
AMCG00012913 mRNA downstream 108812 13894668 ~ 13904145 (+) True AMCG00012913
AMCG00012914 mRNA downstream 154570 13940426 ~ 13952847 (+) True AMCG00012914
AMCG00012915 mRNA downstream 168230 13954086 ~ 13960215 (+) True AMCG00012915
TU50630 other upstream 1237861 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1283368 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3329343 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3329343 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3329343 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 642457 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 742306 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 846501 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 1344939 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1691323 15477179 ~ 15479366 (+) True G41264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055786 False 1886 mRNA 0.55 13 NC_007115.7 23886726 ~ 24019711 (-)
grasscarp (Ctenopharyngodon idella) CI01000019_02561843_02594219.mRNA True 2468 mRNA 0.49 15 CI01000019 2561736 ~ 2595071 (+)
rainbow trout (Oncorhynchus mykiss) TU334971 True 2871 lncRNA 0.41 2 NC_048567.1 73972087 ~ 73974981 (+)
striped catfish (Pangasianodon hypophthalmus) TU334971 True 7647 lncRNA 0.39 2 NC_047612.1 14721809 ~ 14731004 (-)