RNA id: AMCG00012913


Basic Information

Item Value
RNA id AMCG00012913
length 3751
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00012913
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13894668 ~ 13904145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGGAAGGAGGGGCAATGGAGCGCCACGGCGAGTCAAGTAGGATGGCAGTTTAATGGACCcagcttgtttgtttaatataaatctcTGTAGTGAAATGGTTGATTTATGTATCTCTGTAGGGGATTCACAGTCAGCCCTCTTTTGAAAGTATTGAATCAGTTCTTGAGGAGCGAATTACCTCCACGTCTCTACCTGTAAGtgtGGTGTCCTAGCGAAGATGTGACATGAGACCATGGTGTGCGAGTGAAAGCTTTGACCGGCACCAGAGGAAGAAGGCCTGGGGAAGTATCTATCCTTCGAGAAATGCCAAGAGGCAACAGTGATCGCAATTCCACCATGGATTTGAACATCTCCGCGAAGCCCAGGCCCCAGTATGGACTTAATGGGAGCCACGAAGCCAGCAGCAGGACTCCCCTGTCGTCTTCCTCTCCGaatGAGGATGCCCTCCAGTTCCTGAGCTGGGAGGAGAAGGAATGCATCATATTCTTCGAGGAGACCATTGACTCCCTGGATGATGATCGAGCAGACTCCACTTTCTCTTCAGGGAGCAGTACTCCAGTTGTTGACCGGGCTACGCCAACCTTCATGGAGCAAAGAAATCCCAGCCCCAAGGGGGAAGACATCATTGACCTGGTTCATGGAAGCCCAACAGAATTCAGCGGGCTTGTTTACAAGCCACATGGCACTGGTGGTGGCACTGCGCTCGCTGCTCATGatgtCACAAGTGTCTCCATGCACCCCGAGTCACATTTTGAGATGAGACCAAGGCGGCAGGTAACGGAAGGCTACCCCTCAGAGTTCACATTCCCTGCTCCACCTCCCCCCATGTCCAATCTAGAAGGAGACTCCTTTGCGTCCCCTTTCTACCACCCTGCCGGCTCCATTCCCACGCCGGTCATCATTGCCCAGAAGATAGCGGAGAACCAGGCAGGGGCCGCACCGTTCTCCTCCACCTCCTTATTGACAGAGAGAAGCAGCAGCCTGGAAAGTGACAGGAGCCCCCCACCCTCTCCTGACTACATGGGCAGGACAGGCCCCACCACAGCAGCAAAGCCTAACAAATATCCAGGCAACATCAATGTCGTCATGGGAGGCAAAGACTATAACCAGACCATCGCGAAAGCAGCCGTCAAGGTTCAGGAAAGGAAAGCGCAAGTGTGGGCCAACCTAACTGGGGCGCCTCTCAATTCCATTAACCTGGAAGAGAAGCCAACCAACCAGAGGAACCAACCAACCAGAAGCACGTCTTTCAGAGACCCCATGCCCAGCAAGTCGAGGCAAGAAGCATTGTCCATTCTGGGCCTGAACAAGAATGTCCCAAAAAGCCCCAGTGGTAGTAAGCCCAGAGTTGTGTCCTCTCCTCCGGATTCACCGAGCAAAGCTGGCATTGCGTCTACTGACCTCCGTTACCACGGCAGTAATCCCCGACCGGGAGCTTTCCCCTTCGGCTCCAGTTCGAAGCCAGCTGCATACAGGCCGGATACCCGTCCCTCCGAGAACAGATCTTCCTGCCACAATGGTGCTCAGAGTGCTCATGTCAGCAGCTCGGCGCCGTTGTCACCAGACCTGGTGAGACAGCGCCCTGCGTCAGCATTCAGACCTCAGGGAATTACAGTGCAGTTCTCCGGGCGAGGGGCCACCGATGAATCCAGAAGACAAGCACTGAGGAAGCTTGGTCTTTTGAAGGActcttgatttattattttttttctatcttttctGGGTAACATTATCTAAGCATGAATATTAATCTACAGGCCGGCCTGGCCAGTGGTGTTGCTATAGATGGaatcttattttttgtgtgataAATATAGTGGTTTGGGGgatgaaaaacaattatttaattatatctgattaatttaatctgaaaagaaacaacaaaaacaatctggCATCTGTGCAAATGGCTTTTCCTGCAATTAAATGTATCCAGGATACTCAATGAAAAGCAACACACATGGGGAAAAAGGACACGTGTATATGACTGATCTGATGACTAATAATTAAtggttttgttctttaattattagttcCTGATATTTATTATAGTAGCTACAGTTTATAAGTCTGATCTGCATTGTTTGGAACTATCAGCCGAGTCTTTGGAAGTGTTGAGACCTTGCATGAGCTGGGCCCATGGGCCTTCTCTCATTGGCAGCCTTTCTTATATACTTGTTTAGTCTTGATATGAAAAAAACTAACCTGCCCAGTTCCCCCAGTGGCATGTTCATTTAAAAGCCCCTGCTCAGAGTCCAGGATGGGTTGTGCTTGGGCCTCACTGCTTAGACTGAGGGCTGTGCTACTCACCATCTAGGGTCAGAACTCCCATCAATTCCCATTAGTGGTCGCAGCCCGCGAGCCTGTCTCAGCTCTGCCCCGACACAAGAACGCTACTGTTTCACCTCTCGGGGAGAAAAAACGAGCAGATGCTGAACGGCAGGTCTTGCGGGACACGTTGGCTGTCTTCATATCTGGGGCGGAAGCAGTAGGTTGCTTCGAATGGTAATTGGCTATTCCAAATTGTAGGGCATTAAAGTGAGGGAGGGGATTgcaattttgtgtgtgtgtgtataatatatatacacacacacacacacttaagtGACAAACTGTGAACATGGTAACCTTAGCCCCTTGAACTAGGAAAGCTAATACTGTGACAAGTATCATGTTTTTGTACTCTGAAGCATTGGGGAAGACCGTTGAGGCTGTAACCAGGAGGAATCTGCATAATATGAATCAATTTTGTACTTTTATAAACTATTAatggtaaaaatgtaaaatgatgcCATCCACAGTTATGACGAGCCAAGCTGAGCTACTTAAGATCCTACAACTCAGTGGTGTTAAACAGCCAAAGCAAtttccttaattgtttttgaaaaccgCTTTCCCAAATGTTAGACCTCCTGTTTAAAAGTGATGTATGTAGCTGGTTTCCTGCAGGTCTTGCTGGTCTTCTGGCTGCAGTAGAAATGGGAAATCCCCAACACATCTACAGCAGCATTGAGTGCCTGTCCGTATCTGTGCTATCAGGGCGAGTGAGTGGGTGCGTGTGGGTGTGTATGCTTGGGCAGGAGCGCGAGTGATTATGAGGGCACACTAATGAGTgtggcattttttttgttttctaatattgACTCCGGTAGTGTAGTCTTATGCTACAATTATTCATGAAGTATTCAGTAACTGTGTGTacgagtgtgtgagtgagttcAATCATAAATAGCAGGATTACCCCTATAGACCAGGAGGATTTCAGGAAACCCTAGTGTAACACACTGCTGCTGGCcctgtattttctttgtgaaGCCATTGTATATTGAATGTTAATCACACCTTGTTTAGATTCTAGTTTAacaatctatatttatattgcatataAATTCAAAGTTTGTGTCTGAAGACTGGTTTATATCTACCTGAGAATGACAGTTTTATTCACTGTATTGTAGAAGACATTTATACTATTAAGGTCACTTTATAAGCAACAgagaataaatgtttgtttaattcttaATTGCTTTATGATGTTTTGCATTGACATGCAAGGTGCTGTCAGATGTAGAGGAGTGGCAGTATAACGATCAATCAAAAATGCCTAGAAATAATTCTCACCTTGGTCAAATATACTAAGCAAATACAACACTTCTGTATTCAATATGCTGTTTCATGGACAGAAAGCAAACTGACACAAGTTCTCCCCAAAGGCACAGAATGCAACCTGTCCAGATCTCTCCTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50893 lncRNA upstream 9479 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 633489 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 779136 13115312 ~ 13115532 (+) True G40777
TU50828 lncRNA upstream 779415 13114893 ~ 13115253 (+) True G40776
TU50742 lncRNA upstream 1151974 12741174 ~ 12742694 (+) True G40710
TU50918 lncRNA downstream 82805 13986950 ~ 13988088 (+) True G40846
TU50999 lncRNA downstream 281095 14185240 ~ 14186136 (+) True G40920
TU51050 lncRNA downstream 436801 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 491431 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 493452 14397597 ~ 14397855 (+) True G40989
AMCG00012916 mRNA upstream 3103 13889708 ~ 13891565 (+) True AMCG00012916
AMCG00012912 mRNA upstream 12462 13863807 ~ 13882206 (+) True AMCG00012912
AMCG00012909 mRNA upstream 108812 13773790 ~ 13785856 (+) True AMCG00012909
AMCG00012911 mRNA upstream 134070 13751149 ~ 13760598 (+) True AMCG00012911
AMCG00012910 mRNA upstream 150772 13714322 ~ 13743896 (+) True AMCG00012910
AMCG00012914 mRNA downstream 36281 13940426 ~ 13952847 (+) True AMCG00012914
AMCG00012915 mRNA downstream 49941 13954086 ~ 13960215 (+) True AMCG00012915
AMCG00012918 mRNA downstream 74403 13978548 ~ 13989776 (+) True AMCG00012918
AMCG00012920 mRNA downstream 138114 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012921 mRNA downstream 174179 14078324 ~ 14102726 (+) True AMCG00012921
TU50630 other upstream 1358739 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1404246 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3450221 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3450221 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3450221 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 524168 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 624017 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 728212 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 1226650 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1573034 15477179 ~ 15479366 (+) True G41264

Expression Profile