RNA id: AMCG00012918



Basic Information


Item Value
RNA id AMCG00012918
length 1029
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00012918
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13978548 ~ 13989776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGAAAGAGCAAGTAGTAAACTCGCAGTTTTCGGTCTGGTACCCGTTATTCAAGAAGCACACGATTAAAAGTTTGATTCTTCCCTTGCCTCAGAATGTGATCGATTACCTGCTGGATGACGGGACTCTAGTAGTTTCCGGGAGAGAAGAGCCCCCGCAGAATTCTCAGCCAAACAACAACGACTCTGATGAGGAGGAAGATGTACAGtGGTCAGACGATGAGACTACAACAACTGTCACAgcTCCTGAATTTCCAGAGTTCAATTCCAAAGTCCAAGAAGCAATCAATGCCCTCGGCGGCAGTGTCTTCCCAAAGATGAACTGGAGTGCTCCAAGGGATGCCAACTGGATCGCAATGAACAGTTCTCTACAGTGCCAGAGCCTGAGTGACATTTTCCTGCTGTTCAAGAGCTCAGACTTCATCACTCATGACTTCACTCAGCCgtTCCTTCGCTGCAACGATGACTCCCCAGACCCATTGATAACCTATGAGcttGTCTTGAGGAAATGGTGCGAACTAATCCCTGGCGGGGAGTTCCGGTGCTTCGTCAAGGAAAACAAGCTGATAGGAATCTCGCAGAGGGACTACACACAGCACTATGACCATGTTTCAAAGCAGGAAGAGGACATTTCCAGATCCCTCCAGGATTTCTTCAAGGACAACATTCAGTACAAGTTTCTGGATGAGGACTTCGTTTTTGATGTCTACAGAGATAGTCAGGGCCGAGTGTGGCTGATAGATCTGAATCCCTTTGGTGAGGTGACCGACTCATTGTTGTTTACATGGGAAGAACTAACCTCAGGACACCGTCTCAGGGGGGACCATGTTGAGGGGGACACTACAGAGCAGGATTCTCCAGCTTTCCGTTACACCACCAGTGAAGTGACTGTGCAACCCAGCCCCTGCCTCAGCTACCGGATTCCCCGGGACTTTGTGGACCTGTCCACTGGGGAGGACGTGTACAAGCTCATTGACTTCCTCAAGCTGaaaaaaagtcaGCAAGAGGAATCAGACGAGGAATGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50893 lncRNA upstream 93359 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 717369 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 863016 13115312 ~ 13115532 (+) True G40777
TU50828 lncRNA upstream 863295 13114893 ~ 13115253 (+) True G40776
TU50742 lncRNA upstream 1235854 12741174 ~ 12742694 (+) True G40710
TU50999 lncRNA downstream 195464 14185240 ~ 14186136 (+) True G40920
TU51050 lncRNA downstream 351170 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 405800 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 407821 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 635476 14625252 ~ 14625850 (+) True G41054
AMCG00012915 mRNA upstream 18333 13954086 ~ 13960215 (+) True AMCG00012915
AMCG00012914 mRNA upstream 25701 13940426 ~ 13952847 (+) True AMCG00012914
AMCG00012913 mRNA upstream 74403 13894668 ~ 13904145 (+) True AMCG00012913
AMCG00012916 mRNA upstream 86983 13889708 ~ 13891565 (+) True AMCG00012916
AMCG00012912 mRNA upstream 96342 13863807 ~ 13882206 (+) True AMCG00012912
AMCG00012920 mRNA downstream 52483 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012921 mRNA downstream 88548 14078324 ~ 14102726 (+) True AMCG00012921
AMCG00012923 mRNA downstream 156711 14146487 ~ 14152861 (+) True AMCG00012923
AMCG00012922 mRNA downstream 173891 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012926 mRNA downstream 238862 14228638 ~ 14259163 (+) True AMCG00012926
TU50630 other upstream 1442619 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1488126 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3534101 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3534101 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3534101 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 438537 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 538386 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 642581 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 1141019 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1487403 15477179 ~ 15479366 (+) True G41264

Expression Profile