RNA id: AMCG00012921


Basic Information

Item Value
RNA id AMCG00012921
length 3582
RNA type mRNA
GC content 0.39
exon number 8
gene id AMCG00012921
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14078324 ~ 14102726 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTACTCTTGTGCTCCCCAGAGTCTCTGGAGGCGAGCTGTTTGATCGAATCGTGGAGAAAGGCTTTTACACCGAGAAGGATGCGAGCACGCTGATTCGGCAGGTCCTGGATGCAGTCAATTATCTGCACAAGATGGGAATTGTGCACCGGGATCTCAAGCCAGAGAACCTGCTCTACTTCAACCCTGCCGACGAGTCCAAGATCATGATCAGTGACTTTGGGCTGTCCAAAATGGAGGGAACGGGAGACGTCATGTCCACAGCGTGTGGGACCCCAGGCTAtgtggCCCCTGAGGTGTTGGCTCAGAAGCCCTACAGCAAAGCAGTTGACTGTTGGTCCATTGGTGTCATAGCTTACATTCTgtTGTGTGGTTACCCTCCATTCTACGATGAAAATGATTCCAAGCTGTTTGAACAGATTTTAAAGGCAGAGTACGAGTTTGATGCTCCATATTGGGATGACATATCGGATTCTGCTAAAGATTTCATTAGCAGTTTGATGGAGAAGGATCCCAATAAGCGGTACACATGTGAGCAGGCTCTGCGACACCCCTGGATTGCTGGAGACACGGCTCTGTGCAAGAATATACACGAGTCCGTGAGTCGCCAGATTCGGAAGAACTTCGCAAAAAGCAAATGGAGGCAAGCCTTCAATGCCACCGCTGTGGTCAGACACATGAGGAGACTGCACCTGGGCAGCAGTATAGAGGGGTCACAACACCAGAACGCCGTGACCACCCCCCACCTCAACAGCCCTCCGACCGACACAATGACTCGCAAGGACTGCATGTCCCCCTCCGCTCCCTGCAGCCTGGTGTCGGcagcctcctccccctccccagtgGGAGGAGAGCACAGGCCCCGGCCGTCCACAGTCACCACAGTGCACACCGGGAGCAAGTGATGCCCAGCCCTGCAGGGAGCCACGTGGGAGGCCACGGCGCTGTGAGCGGTGCCCCTGCTTTCTCTCGGAGGTCCCACGCTGTCAGCTGCACTGACACCTGGGAAGACGGGAAGAGCAGAAGGGTTTTTATGGCCATATTTTATACTGCAACTACTGGAGAGTCTCATTTATCATGGAACGTGCATTGAACTGTATCATAATGAATTTTATCACTATCCAGCTCTTTGCATATTCTGGTTAAATAGGGGGGATGCTGTTTGTATGATTTTGATCGTTATTTTtgctattgtgttttttttctctgtttgtttgtttgtttgtttgtttgtttgtttcagtcttGATTACCAAGTTCTACAGTGTCACGTTTTGGTAGATTGTGGTTTGGGGTTTTGTACGTTTTCAACGCTGATCTATGTGCACATGACAAAAAGTGCTTTAAggatttaagaaaactggagGGGTATTTTCTCAAGTAATTACTTGAAGTAGCTTTTGACAAGTTAAGACAGATGTAACTCCTAGATAAAGCTACActtgtatgtttgtgttatcATTGATTTGCCAGGTGGTTTTAGATTGTAAGCAGCTTACATCCCACAATGGGGTTATAGCATTGTAaaaatttgcatatttgttaaTTGAAACGGTaacatgtttcattattttcttaaattaaaaaaaacttttgtaaatcattaagaaaatataatattcatataattatgtttttagaaTTAAGTTTCTGAAGTCAGCTTTTGAATAGAGGAACGATTTAAGATGACACGTTAgtcttaggaaaaaaaaaagcctataGATCCACTTATCCTAAGCTTATTTAAGATCCTGTATTAACTTGTAAAGtcctcttttgtgtttttctgaaatatCATAGATTGTGTTTGAACTGCTAGTTCTCAGGGAAATTGGTAACTATAATTGGGttcaagatgttagacctaatATACAATTGGAAAATCCAGTATTATGTATGTACTCTAACTGATACAATATCTAAATTGGGCGGACTGTGAGTAAAGTTACTCGGGTTTtatcatcttttctttttgttagtCTTGCCTCAGTGTCATCTCACTTAAACTTGAAAGTGATAACAAAAAGGTACAAAAGATGAACTAATTTATACTTAAGTGCCATTGGTGCGTTTTGGTTTCAGAAGACCATATTCATAAAACGTTTACTGATGAGCTAAATTGACACCTGAAACCAATAAATAAGATGGTGAAGAGTCACATCAGACTGTCAGAGCGCTAAACTGAGTTAACAAAAGCATATGAAATGcactgtttttcattgtgtaccatttgtgttttgtttttcatcttttacTAAACGTGaacattttatgaatatggcttgaatattttattttgaaatgctgtaatacaatttcttaaaagtatatatatatcaccaggTCTGGAGGAAatgttaaaaactgaaaacacaaataactgtTAGTTATCCTCGATGTAGTTTACCCAAAAGAAAGCAAGGTGCCAATGATAGTGTTGCACAGTGACCTTTTACTGAAAACTCTTTGACTCGAATGACACTTGAGCACATACATACAATCTGCGTTTGTTGTTACCTTTCAGTTCTACCTGCAAGTACGGCTTTACCAGCACCTATGCACAAAatgttatttgcattttctttcatatttccTTTAGTGTACAAGCCTTAGTGAGCATCAGGCCAATAAGGCTGGCTTTGCAAACTCACATACAACCTAACATCAGACTTCATCACTCATTTAGCCCCTTCATCTCCTTCATAATGGAAACATTATGTCATACCTGGATGCATTTcacattgtacaaattccaccgtgacattttttacattttaacaaatgttcCTTTTCCCACAAAACAGAAGACAtcttattgtgtttttctttcacaaaactgtatttaattgcaaacaaaaatgtattaaaataatatagatagataaatgtTGGTTTTAGGCATTACAAATAATTGggttattaaataaacataaatctCAAATGCCCCTGaatgtaactttaaaaatagTAATCTAGTTTTACTTTAAGGAATAATTTCTACTTCATTAAATCCTGATTCTTGACATCACTGAAGGATGTTGTTGCAGACGTTTTCTGAGCCTCCTTCACTGCTTCAGTCTGTTCTGAGGTACATGACCAAAATTGGTAATCCAGTTCTGCTGCACCTTAGAATAGATTAGCCCAACCTCTTTGCTTACTTTtgcctttccttttctctttccttttttctttttctttctttctgtttgtttatttgtttctctcgTTGTTTTAAACAACCATGAGAACTGTCAgtacacttatttttttaagttagagCTGTAATCTGCACCGAGCAGGCAATATGTTTGGTGTAGTGGGCATCGCACAGATATGTTCATCTGACGAAACAATCAAAGCTGTACAATATTGTGTGGTTGAACTGAATAAATTCTGTGGTTGGCAGAGACCGCAAGAGCTGCATTTTCTGAagacattttttctttaaaggacAACCTAACTCttcctctatttatttattttctcttttatttgatACTCTTTTACTTTCAaatattacttttgtttgttatgtagTCAATTTTCATAAAAATGAAGATGGCAATCCTTCAAATGAAGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50918 lncRNA upstream 90236 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 193135 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 817145 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 962792 13115312 ~ 13115532 (+) True G40777
TU50828 lncRNA upstream 963071 13114893 ~ 13115253 (+) True G40776
TU50999 lncRNA downstream 82514 14185240 ~ 14186136 (+) True G40920
TU51050 lncRNA downstream 238220 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 292850 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 294871 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 522526 14625252 ~ 14625850 (+) True G41054
AMCG00012920 mRNA upstream 16411 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012918 mRNA upstream 88548 13978548 ~ 13989776 (+) True AMCG00012918
AMCG00012915 mRNA upstream 118109 13954086 ~ 13960215 (+) True AMCG00012915
AMCG00012914 mRNA upstream 125477 13940426 ~ 13952847 (+) True AMCG00012914
AMCG00012913 mRNA upstream 174179 13894668 ~ 13904145 (+) True AMCG00012913
AMCG00012923 mRNA downstream 43761 14146487 ~ 14152861 (+) True AMCG00012923
AMCG00012922 mRNA downstream 60941 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012926 mRNA downstream 125912 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012929 mRNA downstream 196682 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012930 mRNA downstream 213115 14315841 ~ 14324873 (+) True AMCG00012930
TU50630 other upstream 1542395 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1587902 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3633877 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3633877 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3633877 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 325587 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 425436 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 529631 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 1028069 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1374453 15477179 ~ 15479366 (+) True G41264

Expression Profile