RNA id: AMCG00012922


Basic Information

Item Value
RNA id AMCG00012922
length 3822
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00012922
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14163667 ~ 14175623 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAGTGTGGGTAAATACAGGTCTTATATATTCTTAGACAGCCgccatattttatatttgcaaaattGTCTCTAATCAGTGTTGTATCAGTAAAATACGCAGtatgttattataaataattgcttttaaaagccAGCGTAGAGGCGCATTGTTGATATAGCCTATGTGTATGCAGGTTAATACCACTACACAGTACTGGGCACTTCAATACCCTTGATTCCAGTGCACTGAGCAATGGAAGGGGACGATGACATGGACCTGCTAGCTTCACTGCTGGAGGAGAAcgagagagcagagcagagcagccaGTCCCAGGAGGGGGTGGACGACCTGGATGAGTTGTTTGATCAGGAGGATGATGAAGAGTTTGACGAGGGCcaggaggatgaggaagaggagcaggaggGCACCACACAACAGAAGGAAGATGTAAAGGCACTATTTGGAGATGTAGAGGATTTGGAGGAAGAAGACGAGATGGTGCAAGAAACAAGCCGAGGACCAGGAGCTGAAGAAAACCAAGATAAATCTAAGCAGGACTTGGAAGCTGAACTGAGAAGAATGCAGGAGCAAATGCAGAAGTTACAGCAGCAGTTACTAGCCACACAGAGGGCCATCAGCAGTCCTCCAAAGAGCTCCCCAGCGGACCAACCAAAAGCACAAACTGCAAGAAGCACCCCCCCTTCACTGAAGGAGAAAGAAGCTAAGAGGCTACAGGAATCCCCTTCTTTTTTTTCGCAGCTTAATTCTGGCAACCATTTCAAATCCAAGCAAAGAGCTGCCCATCAAGCGAAGGTTACAAAGACGGGAAACGGGAGCCCCCCAGTGAAGAGTGTGTGTCCAGGGTTGTCGTCTCCACCCCTGGAGAGCAGCAGTAAGCCCAGTGCTGTGCTGCGTTCCCCCCCTCCTGCTGCTCTGGCTGCCCCCCCATTACCCGCTGCCCCCCCAGTGCCATCTGTCCCTCGATTGTCTGGCAGCTCTGCTCCTGCCCCTCGGGATGTCACTGTGGAAAAGTTCTCCGGACTCCGAATCAGGAGGCCGCGGGTGTCCTCTGTGGAGATGGAGATGAAGATGGCGGATCGCCGAACGATCCGCCTGTCCCAGCTGCCCGACAGGATGGCCCGAGAAAAGCTGGAGGACTGCGACTGGGTGACCTTTGGGGTGGTGATCAGCAAGGTCACGCCTCAGAGCTCGAGCAGCGGCAAGACCTTCAGCATTTGGCGTCTCAACGACCTCCGCAACCTGGATGTGTACGTGTCCCTGTTCCTCTTTGGAGAAGTTCACAAAACGCACTGGAAGACTGACTCTGGCACTGTGATTGGCATCCTCAACCCTAACCCCATGAAACCGAAAGAGGGCTCCGATGGGgtctgtctgtctgtggatcACCCACAGAAAATTTTGGTCATGGGGGAAGCCCAAGACTTTGGCACCTGCAGATCCAAGAAGAAGAACGGAGAGCCCTGCAACCAGATTGTCAACTTGAATGAGTGCCAGTACTGTCAGTACCACGTGAAGGCGCAGTATAAGAAGATGAGCTCGAAGCGTGCAGAGCTGCAGTCCAGCTACTCTGGGAAAGCCCCCAACAAAGTGAAGGGGAGGGCAGGCAGTCTGAAGGAGAGATTGTGCCAAGATGGCTTCCATTACGGAGGGGTGTCTTCAGCGGTGTGTGCAGCTGCCCTTTCTGCGTCTGTTCCCAAGAAGCCGACACAGACGACTTTGAGCACCTTGTTTGTGAAAGGATCGGACCAAATTGTCACAGATGCAAAAAAAATTGCACTGCAGTCGAACGCTGTCTCTGGATGCTCTGATGGTTTTAAGGACTTATTAGCTGTACCGACTCCAGGAGCACTCAATCTGAAGAGACACTTAACCCAAGCAAAGTCTTCAGTTTCAAAAGGGCAACCAGGGCCGGCTATCCAGTCAATTTCTGCATCCCAGCTCATTAAACAGCAGAAACAACAAATGTTGGAGTCAAGGAAAAAGAGAGCCGAAGAGATTCAGAGAAGGTTTTTGCTGAACAGTAGTAATCCTGGCATCCCCGGGACCTCCACCCCAGGCCGGTCGGCTGCCACATCCCCAAAGGTTGTGGCCGAGTTCCCCCGCGAGCACCACGAGAGACGAGCCACGCCAAATGCACCCAAACTGGGCCGCGGCCTCACTGAGGGGCAGGACGTCTTGTTTTTTGACGACTCTCCTCCTTCTGCTCCCAAAATGAGCTTATCGGCCACGAAGCTTGCTGCATTAAAGAAGCTTAGAGCAAAAGGCGCTGTGATCTCAAAAGAAGACCCCAATGCTGTGAAAAGGAAAAGACTAAACGGCGGCCACAAGGAAATCGCTGAAAGAGTGGAGAAGAGCTTTGCGTCACCTGAAGCCGAGCCGATGGACACAGAGGCGGTGGAGCCTGCGCTGAAGAGGAGGCGGCAGGAGCTGGAGTACATGCAGTCGGCTGAGTTCCAGGAAATCCTCAACGCCTCCTCCAGACACATAGGAGCTTTGAAAGCGGCTGAGATCCAGATACAGGAGCAGTACTTTGAGCCGCTGGTGAAGAAAGAGCAAATGGAAGAAAAGATGAGGAACATACGAgagctgaaatgcagggctgtGACATGTAAAACGTGCAAATACACTTACTTCAAGCCCTTGGATACCTGCGTCAGTGAGAAGCACAACTATCATTGGCACGATGCGTTGAAGCGCTTCTTCAAGTGCCAGTGCGGTCAGAGGTCAATCTCGCTGGACAGGATGCCTCATCAGCACTGCAGCAACTGTGGTCTGTTCAAGTGGGAGAGGGACGGAATGCTAAAGGAGAAGTCTGGAATAAAGATTGGAGGAGAGCTGCTGTTAACCAGAGGAGAGGAGCAACCCAAATTCCTCAGCAGTATGAAGTGATTTGTAGATGAATACCCTGATGGTGATTTTACGATCTCATTTCAGCAAGAACCTGGACATTTTTTTGCTTCAGGGTCATTTCTCCCTAGATTATGAATCCTCAAATTTTTAAGCTCTTTACTGTacatactgtttatttttgtgtgttttaggaTCCATTCTTCCTCCTGaatcatgttttttaaagtcCATTCTGGCTCTTACCATGATGTAAACTGTTGGCCGGGtgttaatgtacattttgtttttaatattatgctatatgaaaaaagcatttctaaagtatattttaatttttttaaatctatgcaGTTGTTacccttttaaattaaatgctccAGATTTCATACGCTTGTTGGTTCAACAAGTTCAGTTCTGACATTGTTACCACACATGCCTGCACTCTTGACTTCTCCATCAGAATCTCTCTCTTCTAATCACCTTCCTCCTGGACATGGGGTAAGCTATTTGTAATGAAGCAGATCAACCCACAGAATAGGGTAAAGACTTCTGGAAAGGGTCTGATTTACTCTGTTcataacatacatatacatgttcATACAGATGAGTAGCTTACTAGTGGTGGTGTTTGGTAGAAGAGCAGGCAATATCTAATACCCGGTGTTTTTGTCTGATTCCTGAACTTCCCACAAGAGTCCAACTCTATACTTGATGGGGTTGTGGGGATCTATTCAGTAAATGTAATACGTTTTCAAATAAGTACACTTCAagagatgcatttatttaataaccaatatatacattttctaatagAAAGATTACCGATTTATGCTGggattataatatatttttttttattataggtGGTCTGGAATACAGTTTTGTACCTGCAACACAATGAGTTAAAATATACGGCACCAAACATATatgaaaatcaatatatttttacttaaagTACTTCTCAAGAT

Function

GO: NA

KEGG:

id description
K10736 MCM10; minichromosome maintenance protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50918 lncRNA upstream 175579 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 278478 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 902488 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 1048135 13115312 ~ 13115532 (+) True G40777
TU50828 lncRNA upstream 1048414 13114893 ~ 13115253 (+) True G40776
TU50999 lncRNA downstream 9617 14185240 ~ 14186136 (+) True G40920
TU51050 lncRNA downstream 165323 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 219953 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 221974 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 449629 14625252 ~ 14625850 (+) True G41054
AMCG00012923 mRNA upstream 10806 14146487 ~ 14152861 (+) True AMCG00012923
AMCG00012921 mRNA upstream 60941 14078324 ~ 14102726 (+) True AMCG00012921
AMCG00012920 mRNA upstream 101754 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012918 mRNA upstream 173891 13978548 ~ 13989776 (+) True AMCG00012918
AMCG00012915 mRNA upstream 203452 13954086 ~ 13960215 (+) True AMCG00012915
AMCG00012926 mRNA downstream 53015 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012929 mRNA downstream 123785 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012930 mRNA downstream 140218 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012928 mRNA downstream 157159 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012934 mRNA downstream 190475 14366098 ~ 14395069 (+) True AMCG00012934
TU50630 other upstream 1627738 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1673245 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3719220 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3719220 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3719220 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 252690 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 352539 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 456734 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 955172 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1301556 15477179 ~ 15479366 (+) True G41264

Expression Profile