RNA id: AMCG00012923


Basic Information

Item Value
RNA id AMCG00012923
length 1650
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00012923
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14146487 ~ 14152861 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCCAATACCCCAATGGTGAATGGGCATGTTCCCTGTGGGCCTTTGGGTGCCGATGCTGGGATGGTGGTTGCAGCACAGGCCTCTGCCCATGTTGGCTCCCCGGAGGAAACTCTGCAGCAAATGAACATACTGATCAAAGAAAACAGCGACTTAAAAGAGGCTCTGAAGCAGACGAACACAGCCATGAAGGAGCGATTCGAGGGCCTTGCTGTTTGGAAGGACAAGCAGAAGGAGGAACGGGATTTCCTGGAGCATAAACTACAGGAAGCGAAGGACCGCATTAATGCCCTGACCAAGCGCAACGAAGATCTCAGGAAGAAATTGCAAGCACTTGAAGGGAGTGTGGAGGGAGCCTGTCAGGCTGAGAAGGATGACCTGGTGGCCATGAACTCCGAGCTGCAACTTAAGCTCGGCCATGGCTCACCTGATGACTCCTTTATCGAAATCAGAATTGCAAAGGAAGGTGACCTGAAACTTGCTGAAAATTTGCCACACAACCAAAAAGACCCATCTGCTGCATATGTGCCAAAGTTTGATGAAACACGCTTGGAGTCGGAAGAGTTGACTGTCAGCCAGCTGCTCCAGTCCCTGCGACGTGAGTCCCAGAAGGTGGAGAAACTTGAACTTGAGCTTCAGGCTTCAAGAGAGAGaaTATCCGAATTTGAGAAAAAGGCAGGAATGGTGGCTGAGAGTGGGACTCAGACATCACTGAGAGTTGAAGAAGAGCCTTGTGCAGAAGCCAGATCTGAAGCTGATGTAAAAACTCAACAGAGTGCTCTGCAGGATACATCTCCCACAGAGGTGGAGAACCTGAGGTCTCAGATGATGATGTTGTTTAAGGAACTGCAGCAGGCGCAGGCCAAGCTGGACGAGGctgaaaatatgaagaaaaatctGCATGACCGATGCCGTGATATGGAGCAGGATCTTTCCACTCTCCGTGCGCAGCTGCTGGACAAACAGCAGGTTCAGAACGAGAACGAGAAGCTGAGGCTGCAGGTGGACAGCATGCAAGCTGTCAGTAAACTGGAACAGAGACAGATAGAGGAGGAAAAGAAGAAGATGGGTCAGTTAAAGGATGCCTATACTAAGCTTTATGAAGACTATAATGAAATGAAGAAGAGTCAGGAAGAAAAGAAGAGAGCAGAGaTCTCCAGGGATGAGGTGAGCGAGCTGACCGCGAGGCTCTCAGCAGCCGAGAAGGCCCTGGCAGCCAAGCAGCTGCAGATCGACGAAATGAAGCAGGACATCTTCAAGAAGGAGCAGGAGCTGGAGACCGTTTCTGTGTTCAAGGCTCAGGCTGAGGTGTATTCTTCTGACTTCTACGCCGAGAGACAAGCCCGGGAGAAGATCCACGAGGAGAAGGAACGGCTGGCAGCACAGCTGGAATTTGTGAAGAAGCAGAACAGCCAGCTGCAGGAAGAGATGGAGTCTCTCGGGAGACAATCTATGACTGAGCTTCAACGTCGTCATGTTTCCAGAGGCGCAAATCCCAATGGGCAACATAGTATGCAAGGAGCAAGAGgtgcagacagacaggactGGCAGCAGGGCCATATTCCAGAGCATGCTTGTCCTAAATGCAATGAAATCCTGCCTGACCTTGACAGCCTGCAGATACACATAATGGACTGCATCATATAA

Function

GO: NA

KEGG:

id description
K19946 OPTN, FIP2; optineurin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50918 lncRNA upstream 158399 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 261298 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 885308 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 1030955 13115312 ~ 13115532 (+) True G40777
TU50828 lncRNA upstream 1031234 13114893 ~ 13115253 (+) True G40776
TU50999 lncRNA downstream 32379 14185240 ~ 14186136 (+) True G40920
TU51050 lncRNA downstream 188085 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 242715 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 244736 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 472391 14625252 ~ 14625850 (+) True G41054
AMCG00012921 mRNA upstream 43761 14078324 ~ 14102726 (+) True AMCG00012921
AMCG00012920 mRNA upstream 84574 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012918 mRNA upstream 156711 13978548 ~ 13989776 (+) True AMCG00012918
AMCG00012915 mRNA upstream 186272 13954086 ~ 13960215 (+) True AMCG00012915
AMCG00012914 mRNA upstream 193640 13940426 ~ 13952847 (+) True AMCG00012914
AMCG00012922 mRNA downstream 10806 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012926 mRNA downstream 75777 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012929 mRNA downstream 146547 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012930 mRNA downstream 162980 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012928 mRNA downstream 179921 14332782 ~ 14340902 (+) True AMCG00012928
TU50630 other upstream 1610558 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1656065 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3702040 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3702040 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3702040 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 275452 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 375301 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 479496 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 977934 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1324318 15477179 ~ 15479366 (+) True G41264

Expression Profile