RNA id: AMCG00012926


Basic Information

Item Value
RNA id AMCG00012926
length 1680
RNA type mRNA
GC content 0.54
exon number 15
gene id AMCG00012926
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14228638 ~ 14259163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAAGATATCTCGGCAGTGCATCTACAGATGCTGGTGGTATAAGTGGAGAGAAATGGGCTGTGGCCGTAGTTTCAGGCGTGGCCCGGGAGGAGGAGCACCAAATGGAAAAGATGAAGAAATTCAAGCGGCGGCTCTCCCTCACCTTGCGTGGGAGCCAGACAGTCGACGAGTCCCTGTCTGAGCTGGCCGAGCAGATGACCGTCGAGGAGAACAGTATCAAGGACAATGAGCCCATCGTGAGGAATGGCCGCCCCCCCACGTCGCACAGCATGCACTCCTTCCTGCACCAGTACACCGGCTCCTTCAAAAAGCCACCGCTGCGCAGGCCCCACAGCGTTATCGGCGGCAGCCTCAGCTCCTTCATGGCTATGCCTAGGAACGGCAGCAGGCTAGACATTGTGCATGAGAACCTCAAGATTGGCTCGGATGGCGAGAGCGACCAGGCTTCTGGCACGTCTTCAGATGAGGTGCAGTCTCCCACGGGCGTGTGTCTGAGGAGCAGGGTGCAACGCCGCATCTCCATGGAGGACCTCAACAAGCGTCTGTCCCTCCCTGCGGACATCAGGATACCAGACGGCTACCTGGAGAAGCTGCAGATGAACAGCCCTCCCTTCGACCAGCCAATGAGCCGGCGGTCTCGCAGGGCCTCTCTGTCTGAAATTGGGTTTGGGAAGCTGGAGACCTACATCAAGCTGGACAAACTCGGAGAGGGAACATACGCAACGGTTTTCAAGGGCAGAAGCAAACTGACAGACAACCTGGTGGCACTGAAGGAAATCAGGCTGGAGCATGAAGAGGGAGCCCCCTGCACAGCCATCAGAGAGGTGTCGTTACTAAAGGATCTGAAGCACGCAAACATTGTGACGTTACACGATATTGTTCACACGGACAAGTCACTCACGCTAGTCTTTGAGTACCTGatCTTCTTGTTTCAAATTCTGCGGGGGCTGGCGTACTGCCATCAACGGAAAGTATTGCATCGGGACCTGAAGCCGCAGAATCTGCTCATTAATGAGAGAGGGGAGCTCAAACTCGCAGATTTTGGACTAGCAAGAGCCAAGTCTGTCCCAACGAAGACCTATTCCAACGAGGTGGTGACGTTATGGTACCGCCCCCCCGATGTGCTGCTCGGGTCCTCGGAGTACTCCACACAGATTGACATGTGGGGTGTGGGCTGTATATTCTATGAAATGGCCGCTGGCAGGCCTCTGTTTCCTGGCTCGACGGTGGAAGACGAGCTGCACTTGATTTTCAGACTCCTAGGCACTCCTTCGGAGGATAACTGGCCAGGAATATCATCCATTGAGGAATTCAAATCATACAACTTCCCCAAGTACAAACCCCAGCCGTTCATTAACCACGCGCCAAGGTTGGACTCTGAAGGAATTGAcctgttgttaatgtttttacaatatgaatCCAAGAAAAGAATCTCGGCGAATGAGTCTATGAAGCAGCCCTACTTCAAGAGCCTGGGATCAAGGGTCCACACATTGCCTGAGAGTGTGTCTATTTTCACCCTGAAGGAGGTGCAGCTGCAGAGGGACCCTGGCTTTCGCAGTTCGTCATACCCAGAAACAGGTAAAGACCGGCAGCCGCTGGGCGTGGGAGCTGTCCTGATACAGGCCTTCTGTTGTGCCAGAGTGCAGATCAAGTCTCGGGCTTGCAAACCATAA

Function

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50999 lncRNA upstream 42502 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 240550 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 343449 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 967459 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 1113106 13115312 ~ 13115532 (+) True G40777
TU51050 lncRNA downstream 81783 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 136413 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 138434 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 366089 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 369420 14628583 ~ 14630610 (+) True G41058
AMCG00012922 mRNA upstream 53015 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012923 mRNA upstream 75777 14146487 ~ 14152861 (+) True AMCG00012923
AMCG00012921 mRNA upstream 125912 14078324 ~ 14102726 (+) True AMCG00012921
AMCG00012920 mRNA upstream 166725 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012918 mRNA upstream 238862 13978548 ~ 13989776 (+) True AMCG00012918
AMCG00012929 mRNA downstream 40245 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012930 mRNA downstream 56678 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012928 mRNA downstream 73619 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012934 mRNA downstream 106935 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012935 mRNA downstream 146395 14405558 ~ 14419258 (+) True AMCG00012935
TU50630 other upstream 1692709 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1738216 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3784191 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3784191 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3784191 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 169150 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 268999 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 373194 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 871632 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1218016 15477179 ~ 15479366 (+) True G41264

Expression Profile