RNA id: AMCG00012929


Basic Information

Item Value
RNA id AMCG00012929
length 1770
RNA type mRNA
GC content 0.52
exon number 19
gene id AMCG00012929
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14299408 ~ 14313229 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCTGTGAACGATCCCAGCTCGTTTTCTGCTCTATCAAAGTGCATCACCAGACACCTGAACCTGCGCTTTCATGTTGACTTTGACAGTCGTGTCATTAAAGGCAAAGTGGCCCTGACTGTAGAAATACTGGAGGACAAATGCGCCAGCCTGattCTTGACACCAAGGACTTGAAGATCAGCAAAGTCACAGCTAATGGGCAGGAGGCCAAGTTTTCCCTGGGACCCCAGCACAGCTTCAAGGGCTCCCCTCTGGAGATCTCCCTGCCTTTTGAATTGTCCCGGGGTCAGCATGTGATCATCGAGGTGACCTACGAGACCTCCCCCAAGGCCTCGGCTCTGCAGTGGCTCACGCCTGAACAGACTGCTGGGAAAAAGCACCCTTATCTCTTCAGTCAATGCCAGGCTACCCACTGTCGGACCATGGTCCCTTGTCAGGATACCCCTTCTGTGAAACACACCTACTATGCGCAGGTGTCGGTCCCTAAGGAATTGGTGGCGCTGATGAGTGCAGTGAGGGATGGGCAGGAGCCAGACCCTCAGGACAGCAGCAGATCTGTGTTCCGCTTCAGGCAACCCGTCCCCATGCCATCTTATTTAATAGCCATAGTGGTTGGTGCACTGGAGAGCAGAGAGATTGGTCCGAGGAGCAGGGTGTGGTCAGAGAAGGAGCTGGTGGATCTGGGTGCCTATGAGTTTGCAGAGACCGAAGCCATGCTGAAGATTGCAGAGGACCTGGCCGGGCCCTATGTTTGGGGTCAGTATGACCTGCTGGttctccctccttccttcccgTATGGAGGCATGGAAAATCCCTGTCTGACATTCGCCACCCCCACGCTGCTGgcAGGTGACCGATCCTTGTCCAATGTCATTGCACATGAGATCTCTCACAGCTGGACTGGCAACCTGGTGACCAACAAAACCTGGGAGCACTTCTGGCTAAACGAGGGCCACACTGTGTACCTTGAGAGAATGATTGGCAGTCGCCTGGTGAAAACCTTCGGAGCCAATAATCCATTGACCAACCTTGTGCCAAACTTGACAGAAGTGGACACGGACGAGGCTTTTTCCTCTGTCCCCTATGAAAAGGGTTTTGCTTTCCTCTACCATCTGGAAGAGCTAATGGGAGGCCCAGAGGTGTTCATGGGATTTGTCAAGTCCTATATTCAGATGTTTGCTTATAGCAGTGCCACCACCGAAGACTGGAAAAACTACCTGTACACCTATTTTAAGGACAAGgTTGATATTCTGAACAAGGTGGACTGGGATGGGTGGATGCACACACCTGGAATGCCACCAGTCAAACCACAGTATGACACCACCTTAGCTGATGCCTGTATTGCCTTGTGTCAGAAATGGATCAAGGCAAAGGAGGCTGATCTGAAGTCTTTCAGTGAAGCGGATATAAAGCAGTTGTCTTCCCACCAAGTGATCGAGTTCCTGGCTCTCTTGCTGCTGGAGAACCCGATCCCATTGTCACACGTCAAAAGAATGCAGGAGGTCTACAATTTGAATGCCATTAAAAACTCTGAAATAAAACTCAGGCaaTGGGAGGAAGCCGTCCCATTGGCTCTCAAAATGGCCACTGAGCAAGGGCGCATGAAGTTCACACGCCCACTGTTCAGgGAGGTGTACAACTTTGAGAAGTACCGTGAGGAGGCAGTCAACACCTTTCTCAAACACAAGTCTGGCATGCACCCAGTCACAGCCATGCTCACTGCAAAGGATCTGAAGCTGGACCAAGCCAAGAGCACTGGGCTCTAG

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0004463 leukotriene-A4 hydrolase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01254 LTA4H; leukotriene-A4 hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50999 lncRNA upstream 113272 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 311320 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 414219 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 1038229 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 1183876 13115312 ~ 13115532 (+) True G40777
TU51050 lncRNA downstream 27717 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 82347 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 84368 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 312023 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 315354 14628583 ~ 14630610 (+) True G41058
AMCG00012926 mRNA upstream 40245 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012922 mRNA upstream 123785 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012923 mRNA upstream 146547 14146487 ~ 14152861 (+) True AMCG00012923
AMCG00012921 mRNA upstream 196682 14078324 ~ 14102726 (+) True AMCG00012921
AMCG00012920 mRNA upstream 237495 14042259 ~ 14061913 (+) True AMCG00012920
AMCG00012930 mRNA downstream 2612 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012928 mRNA downstream 19553 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012934 mRNA downstream 52869 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012935 mRNA downstream 92329 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012936 mRNA downstream 120574 14433803 ~ 14451103 (+) True AMCG00012936
TU50630 other upstream 1763479 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1808986 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3854961 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3854961 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3854961 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 115084 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 214933 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 319128 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 817566 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1163950 15477179 ~ 15479366 (+) True G41264

Expression Profile