RNA id: AMCG00012930


Basic Information

Item Value
RNA id AMCG00012930
length 2497
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00012930
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14315841 ~ 14324873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATTGGTGGCcgtgtctgtccgtctgtccgtctgtccgtcgGGATGCGCAGCTACAGGTAAAAGCGCCGCTCGCCCCGCTGGAGGGAGGTACTGCGGCTGCCCCTCTGAGCAGCGATGCCCCGCTTCACAGTGCATGTGCGGGACGAGTGGCTCACCGTCCCCTGCAAGGACGCTTCCTACACGGTGCAGTGGCTGGGGGTGGAGGCTCTGCGGCGATACGCCAAGAATAAACCCGACAATGGGGGCTTCAGCTCGGTGAAAGAGGTCCGCTTCTCCGTGCGGCGCTGCCAGGGACAGGGGCTGCTGGACGCGGACGACACTATAGAGGACGTGCTGGAAGACAACGATTTTATCGAAATAGTGATCGAAGGAGATACGATGCCTCAGGATTTCATCCCATCTCAGCCAGGAGCGTCTTATCTTACCTCATCCTACCGAGAACCCGATGAATATATTTTCTTGGATGGCAACCATCTCACTTCAAAGGATCTAATCAATTTAGGGAAAGGGCTCTACAAGATTAAGctTACTCCAGAAGCAGATAACAGAGTTGCACAATCCAGGGAACTTCTAGAAAACATTGTCAAGGAAAATAAAGTCGTTTATGGAATCACGACAGGATTTGGCAAATTTGCACGAACAGTTATACCGAATAGTAAACTCAAGGAATTACAGGAAAACTTGGTTCGATCTCATTCAGCTGGTGTTGGGAAGCCACTGAGCCCTGAGCGCTCCCGGATGCTCCTGGCCCTGAGGATCAACGTCCTGGCCAAAGGCTACAGCGGCATCTCCCCCGCCACCCTCCATCAAATGGTCGAGGCCTTCAATGCCTCCTGCCTGTCCTACGTCCCTGAGAAGGGGACGGTCGGGGCCAGTGGAGACCTTGCCCCCCTGTCGCACCTGGCCCTGGGGCTGATGGGAGAGGGCAAGATGTGGTCACCAAAGAGCGGATGGGCCGATGCCAAATACGTGTTGGAGGCTCATGGACTGTCTCCCATATCATTGAAGCCAAAAGAGGGCCTGGCCCTCATCAATGGGACCCAGATGATCACGTCTCTGGGCGCGGAGGCCGTGGAGAGAGCCCAAGCCATCGCCAGGCAGGCTGACATCATCGCAGCCCTCACACTGGAGGTGCTGAAGGGAACCACCAAGGCCTTCGACAGTGATATCCATGAGCTGCGGCCTCACCCTGGGCAGAAAGAGGTTGCCTTCAGGTTCCGATCCCTGCTGGACTCCGACCACCACCCTTCAGAAATTGCAGAGAGCCACAGATTCTGTGATAGAGTTCAGGATGCATATACCTTACGCTGCTGTCCTCAGGTCCATGGAGTGGTCAATGACACCATAGCTTTTGTCAAGAACATCATCAACACAGAAATCAACAGTGCCACCGACAACCCTATGGTTTTtgctgagagaggagagacgaTTTCAGGAGGCAATTTTCATGGCGAATATCCAGCTAAGGCTCTGGACTACCTGGCCATTGGGGTGCACGAGCTGGCCTCCATCAGTGAGAGGAGGATTGAGCGGCTGTGTAACCCCTCTCTGAGCGAGCTGCCCGCATTCCTGGTCAGCGAGGGCGGCCTGAACTCAGGGTTCATGATCGCCCACTGCACTGCTGCGGCTCTAGTGTCGGAGAATAAAGTGCTGTGTCACCCCTCTTCTGTGGACTCCCTGTCCACCAGTGCTGCCACTGAGGACCACGTGTCCATGGGTGGCTGGGCGGCCAGGAAGGCCCTCAAAGTGCTGCTGGCAGCCTGTCAGGCGATGGAGTTTCTCCGCCCCCTGAGGACGACCACCCCATTGGAGAAAGTCTATGACCTCGTCCGTGTCGTTGTCAAGCCATGGGTTAAGGATCGCTTCATGGCTCCAGACATTGAGGCCGTGTGGCAAGTAGCGCATCCCTACATAGAGAAGTACAGTCTGGAACACATTCCCGAATCTCGGCCCGTCTCGCCAACAGCCTTTGTGCTGGAATCCCCGGCGTCACCACGGAAACGCGTCCGTCACGAATGCGATCACTGACGAAAGGAAGACGAGCAATCCCAGCCACTATATTGTATATCTGTGTTAACAAAGTGATGAGATGACACTAACCAATCCCTTAGGGAAAAAACCCAACAACTCGTGTTTAAAGTACGCAAGCTTCAGTGcttcaaaatgtgcttttaatgttGAATCGCAAAGCAGCAGAAGATTTTAGTAGCACACTTGGACAGTGGCTGTTTTTATACCTTACGATTTTCGTACATCTAGGCACTCACGTTAGACATACTTAATTATCTATTTTAAGCAATTTCACTTCTTCATAGTGCAGCAGGTATTAAAGTTGTTTGCTTCTGGAATTTACACTTCaaatataaactttattttgaacttggtattatttgttaataaatgaAGATAAAACTGGTTGTGAATAAAATGTCTTGTTTCTAcctctgtttttattgtatacaACTGATGACTGGCTTAAGTGGCTCAATAAAATG

Function

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0019557 histidine catabolic process to glutamate and formate biological_process
GO:0009058 biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004397 histidine ammonia-lyase activity molecular_function

KEGG:

id description
K01745 hutH, HAL; histidine ammonia-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50999 lncRNA upstream 129705 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 327753 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 430652 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 1054662 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 1200309 13115312 ~ 13115532 (+) True G40777
TU51050 lncRNA downstream 16073 14340946 ~ 14344481 (+) True G40963
TU51077 lncRNA downstream 70703 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 72724 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 300379 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 303710 14628583 ~ 14630610 (+) True G41058
AMCG00012929 mRNA upstream 2612 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012926 mRNA upstream 56678 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012922 mRNA upstream 140218 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012923 mRNA upstream 162980 14146487 ~ 14152861 (+) True AMCG00012923
AMCG00012921 mRNA upstream 213115 14078324 ~ 14102726 (+) True AMCG00012921
AMCG00012928 mRNA downstream 7909 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012934 mRNA downstream 41225 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012935 mRNA downstream 80685 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012936 mRNA downstream 108930 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012939 mRNA downstream 154203 14479076 ~ 14510489 (+) True AMCG00012939
TU50630 other upstream 1779912 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1825419 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3871394 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3871394 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3871394 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 103440 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 203289 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 307484 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 805922 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1152306 15477179 ~ 15479366 (+) True G41264

Expression Profile