RNA id: AMCG00012931


Basic Information

Item Value
RNA id AMCG00012931
length 2093
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00012931
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14340416 ~ 14344472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGAGGTTTGCGGTGTTTACGAGGTTTATAACACGACAAAGCCCGTAGACTTTAAGCATCGCAATGAGTTTACCCTTGAACCCAAAGCCCTTCCTGAACGGCCTGACTGGTAAACCAGTCATGGTGAAGTTGAAGTGGGGGATGGAGTACAAAGGCTACCTGGTGTCGGTTGATGGGTACATGAACATGCAGCTGGCTAACACTGAGGAGTATGTCGATGGAGCACTGGCAGGTCATTTAGGAGAAGTCCTTGTTCGGtgcaataatgttttatatatcaGAGGTgttgaagaagaggaagaagacgGAGAAATGAgagaataaaacatgacattttgtaaagaaaatccCTGTTTTTTACATTAGACGTTTTGTACCTCATGTAAACATGATTTGAgcctttgttgttttgaattgtgCAGGATATCTATTCCTGCAAAGAgaacctttttcttttattttttattcgaCTGTATCTTTAAGTTAAACCTTGTGCTTCAACAACAGCACAGACATAATAAAATTGTGCATATTGCACTTTTCATAAAGTTGGTGATCTTTGGCTTTTTCTTAAAGGGCTTATAGATATGGTGTTTTGCTGTGGGTGGTGGGCAATagccttttgtttatttttaggccCTATACACGTTTCCATGAAGCTCTGTCTTCACTTACAAGACTTTAGTCTCTTCTCCTTATACTCTCCACCTTTTGCAGATCTATTTTTGATGATTTATGTAGAGCTGGATTATGTTGTCTGATTGAATATTAAACAGAATATTAAATTTTCTGAAACCACTCCAATGCTAGTAATCGTGATTCATACCGTCGGCAGTAGCCAAAAATCATGAAACTACAATTTGCTGTTGTGTAGAGtacatattttctcattttcaccCGCTGAACGTGTTATTTTATCTGAAACGAAAGGTTTTGTGAACACTCAGAGGTTGTCTGTGTGGATTAGAGAGAACATTTGCTGGTGGTTTCTCACAGAATATTTGCTTATTATAATAAACCCACAAAACTAAGGTAGTGCAAAGGTTTCTGATTGAGCAGTTGGataaaatttattaaaaatctaaagaaGCTTCCCCCCTTATAAAAATCTTAACCGTCAGATCAGTTTGTTGTAGTTTGGTATCTGAAGTTAAGCAATGGTTGGCGAGTCCCAGGTTGGTTGGTGTTCATTAAACAAAAGGGGAGAAGAGATGGGCTGAGCATGAATACAGGCACTCTAATTGTTGGCAGATCAGTCTTTTTCctgttcaattaaatcaatccCTACAAGAATGTGTGGAATTGAACTGAAGTGGTATGGAATTAACAAACAGCCATTCCTTTTCAAAGGTTAATTACAATCCCACTTCCACATCGAAGATTCTTAATGCTGAATTGACCCCAAACTCTAATTCTGTGTTTCTGTAGATATGAATATCCTGAGCAGTGTTGGTGCATTTGGTGTTTAAGTAATAATGCAACGTAAATCTTCAAAGGCTGTAAATCGAGTTCAGTTGTTTAAAAGATTACCAAAATGGATTTGGCTGATGTGGGACTAAACTCTGACAgggatgaaataaaaaaaataaaatcatcttTATACACTGcttgtgtgctttttattttcttttaagagGGATGGGGTTCTGGGTTTCTTAATGTAAAGttgttacataaaaaaaaaaagcccaacgCAAAGTACTTCAGGTACAGTTAGTTTTGATGCATTAATTTTGGTTACTGAAAACGCACTTGTGTAAAGCTGTGAGGGAGGGAGCTCatgtaaagaaatatatttcttcttctcTGGCGTCTGTTGTGTCTGTGGTGCCCTTTTTCTTAACTGTTGGTGGCTTTGAGCGCATCATCAGCTTTCTCACAGTCTggaaaggaagaaacaaaagctttattaaattaaactggcCAATGTGTGAAAAAGCATTatccatatataaatataatgccttgcaaaagtattcaaacccCTGGTCAATTCTCTCTTAttattgaattacaaatggtacattgaaatttcattccgtttgatattttattttaaaacacaaactcaaaatcaattattgtaaggtg

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11098 SNRPF, SMF; small nuclear ribonucleoprotein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51054 lncRNA downstream 606 14339348 ~ 14339810 (-) True G40967
TU51053 lncRNA downstream 1188 14338914 ~ 14339228 (-) True G40966
TU51020 lncRNA downstream 43640 14296574 ~ 14296776 (-) True G40941
TU50982 lncRNA downstream 234146 14099946 ~ 14106270 (-) True G40903
TU50970 lncRNA downstream 353704 13985178 ~ 13986712 (-) True G40892
TU51133 lncRNA upstream 164125 14508557 ~ 14510685 (-) True G41030
TU51122 lncRNA upstream 183722 14528154 ~ 14529773 (-) True G41020
TU51152 lncRNA upstream 243413 14587845 ~ 14588126 (-) True G41047
TU51203 lncRNA upstream 372802 14717234 ~ 14717564 (-) True G41088
TU51218 lncRNA upstream 389303 14733735 ~ 14736629 (-) True G41102
AMCG00012932 mRNA downstream 8614 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012933 mRNA downstream 59695 14262518 ~ 14280721 (-) True AMCG00012933
AMCG00012927 mRNA downstream 150329 14186362 ~ 14190087 (-) True AMCG00012927
AMCG00012924 mRNA downstream 159476 14175380 ~ 14180940 (-) True AMCG00012924
AMCG00012925 mRNA downstream 197067 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012938 mRNA upstream 80379 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012937 mRNA upstream 107983 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012944 mRNA upstream 330653 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012943 mRNA upstream 413369 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012948 mRNA upstream 450610 14795042 ~ 14796838 (-) True AMCG00012948
TU50830 other downstream 1224929 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2086973 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5227340 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 7884238 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12156253 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3535793 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3609631 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3831629 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3898318 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4632628 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile