RNA id: AMCG00012932


Basic Information

Item Value
RNA id AMCG00012932
length 2258
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00012932
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14326065 ~ 14331802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTTTAtccctctttgcttttctgCGGGGTATTTACtgtcattaacaatgtctaAAGAATTTAAACTGCTTGTCAAAAACGCGAAACAAGTAGTTTTGGTTTGTAATAACGGCGAGAGATACCTAACGAAAGATGGGCTGCAACACATTGCACTGACTGACAATGCCAGTCTGGTAATCGGACAAGATGGTCTCCTGAAGGCTGTGGGGCCAGCTGACAGCATTGACTCTCAGTTCAAGGCTGcctcatttgaaaatataattgatgCCTCTGGAATGTGTGTCATACCAGGACTGATAGACGCACACACTCATCCAGTATGGGCGGGGGATAGGGTCCATGAATTTGCAATGAAGCTGGCAGGGGCAACATACATGGAGGTGCATGAGGCTGGGGGCGGCATCAACTACACCGTGGAGCACACCCGCCGGGCTGCCCCGGAGCAGCTGCTGGGCAGCCTGAAGCAGCGGTTGCTGAGGATGCTGAGGGCCGGCACCACGCTGGTAGAGTGCAAGAGCGGATATGGATTGGAGCTGGACACCGAAGCCAAAATGCTGTCTGTCATTGAGCAGGCTCGCCGGGAGCTCCCCATAGGCATCTCCGCCACATACTGCGGAGCGCATTCGGTGCCCAAGGGGAAGACTGCAATGGAGGCTGCCAACGAGATCGTTAAAGTTCATCTCCCGGCACTGAAAGACAAGATGTGCCAAGGCGAGCTCAGCATTGAGAATATAGATGTGTTCTGTGAGAAAGGCGTCTTTGACCTCAGCTGCACCCGGAACATTCTGCAGGCGGGAAAAGACATGGGGCTGCAGATTAACTTCCACGGGGATGAGCTTCATCCAATGCACTCAGCAGAGcttGGCGCTGAAATGAACGCCCTGGCTATTAGCCACCTGGAGGAAGTGACCGACGAGGGGATTACCGCCATGGCTCAAGCCAAAACCTCCGCTGTCCTCTTACCAACAACTGCCTATATCTTAAGGCTGAAGCAACCCAGAGCCAGGGCCATGCTTGATGCAGGGGTCATAGTTGCTCTGGGCAGTGACTTCAATCCCAACGCCTACTGCTGCTCAATGCCCATAGTCATGCACCTGGCCTGTGTCAACATGCGAATGGCAATGAACGAGGCTTTGGCTGCTGCCACCATCAACGCTGCCTACGCCCTGGGCCGGTCCCACTGCCAGGGCTCTCTAGAGGTCAACAAGCAAGGAGACCTCATCATCATCAACTCTACACGGTGGGAACATCTGATCTACCAGCTCGGAGGACACCAGGAGCTCATCCGCTATGTTGTTATCAAAGGAGTTGTGGTTTATGACAACAGCAACACCATGGACTACTAAACCACCTGTATATCTGTGTACCTGTGTGCATGTCGAAGGGAAATGTAATTGACCTCAATTAGAATATCATCACCTTTTGGCATTTTCCTTCATAATTGATATACACTGTATTGTAAAAGAGTTACTGATGTTTTCCCTTGGTAATTATGTATCTGTATAGCTGTTCTCATGAAGTTCTTTTCCAGACATCTGATGTTTAAGTATAATTAGAAGCATTCCTGTCTTTCAAAAATAGTACACTTGTGATTGATACCTTGAATGAAATACACACGAATCCCAGAGGCCATAGAGCAATAACCCTTCATTTCTAACCTGCAGGTCTTTTTCAATAAAACCTATTCAGATAGGTTAACCTATGCTGTCTCTCATTGTCATGTGCACCCAGTGCATATTTATCTGTATAGTTtctgcatttgtattgttatcCTCTGCTTGTTGTTCCTACTTGTAAAATTCCTAGCCATACACACCACTATTGACACAGCGTATCAGGGGATTATTTACAGTGGTCAGTTTTGTCTCAGTtctttgaaatcaaatctacatTATCTACAAAGCaagacctttttgttttctaaagctAAACTTTTCTGATATTTGAAGGTatgtaaataatgaatgaatattaACCATCAGATCTAGGTCACTGTGGATAATGTAACGTTCTGTGCTTTGAAGGTTTAAAAATTAATCAAGTTTGAGTCTGAACCAAAAAAAGCCTTTGAGAACCTAAACATCAATATATGGGAGGTAATTCCCATCTTTCCAACAAACAATAAACTCAGACTGCTgtgtatatatcatattattactgaagaatctttttttttcaatacaaaggAATATGAAATACACACGTACCTAAAGACTACTTACATATAGTACCTTAAGAATAAACAGACTATCACAA

Function

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01468 hutI, AMDHD1; imidazolonepropionase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51020 lncRNA downstream 29289 14296574 ~ 14296776 (-) True G40941
TU50982 lncRNA downstream 219795 14099946 ~ 14106270 (-) True G40903
TU50970 lncRNA downstream 339353 13985178 ~ 13986712 (-) True G40892
TU50934 lncRNA downstream 366245 13958804 ~ 13959820 (-) True G40860
TU50942 lncRNA downstream 440890 13883597 ~ 13885175 (-) True G40868
TU51053 lncRNA upstream 7112 14338914 ~ 14339228 (-) True G40966
TU51054 lncRNA upstream 7546 14339348 ~ 14339810 (-) True G40967
TU51055 lncRNA upstream 9101 14340903 ~ 14344472 (-) False AMCG00012931
TU51133 lncRNA upstream 176755 14508557 ~ 14510685 (-) True G41030
TU51122 lncRNA upstream 196352 14528154 ~ 14529773 (-) True G41020
AMCG00012933 mRNA downstream 45344 14262518 ~ 14280721 (-) True AMCG00012933
AMCG00012927 mRNA downstream 135978 14186362 ~ 14190087 (-) True AMCG00012927
AMCG00012924 mRNA downstream 145125 14175380 ~ 14180940 (-) True AMCG00012924
AMCG00012925 mRNA downstream 182716 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012919 mRNA downstream 350370 13973467 ~ 13975695 (-) True AMCG00012919
AMCG00012931 mRNA upstream 8614 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012938 mRNA upstream 93009 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012937 mRNA upstream 120613 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012944 mRNA upstream 343283 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012943 mRNA upstream 425999 14757801 ~ 14772607 (-) True AMCG00012943
TU50830 other downstream 1210578 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2072622 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5212989 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 7869887 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12141902 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3548423 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3622261 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3844259 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3910948 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4645258 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile