RNA id: AMCG00012933


Basic Information

Item Value
RNA id AMCG00012933
length 2076
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00012933
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14262518 ~ 14280721 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGGTTCCTGGTGGCAATGTTTCATGTGGAAGGGGACAGAAATGTATATGTGGAGGCACCACCTAGAAATATCATCAAGAAGGTGATTGGACAAAAATTTGTCTACAAATTTGTGTCCTTCCCCGAGATCCTGAAGATGGACCCACAGACGGTGGAGATGGGAAGAGAGGGTGTGCTCCTGCAGGACCCCGACTCCTTGGGCCTGGACGCCAAGGAGTCTCACAAACTTCCCCTGGGCGCCCTAAGGGCGGCCGGCCGTAACGACTACATTCACTCAGGCCTGTATTCCTCCTTCACCATCAACTCCCTGCAGAACCAGCCGGAGCTCTTCAAGGCCATCAAGGTGGAGAAGCAGGATGAGCGCGCGGAGGGGAAGCTGGCAGGAGATGAAGTGAGGACTGTGATCCGCTTCGTAACCAACAAAACCGACAAGTTGGTGGTGTCGGTGCCGTCCTCTCCCACGTCCTCGGCTGAGGCCACAGCGGCATTCCTGAGCTCATCCCTCTCTGCCAAATCCTCCCCCTCCTTGATGTCGGCTCATGCCACGCACCTCTGCTCgcgctccccctcccccagccctTCCTTCCTGTCGGGAAGCCGGAGCCCCGACCTGGAAGCAGATGACTTAGAGCAATGTGCCCAGCCTCTGAACCTCTCCGCCAGCCGCAAGGCCAGGTCCCCTCATGTGACTGAGAAGCGGAACGTGGCCGCCCTTCCTCCCAAAGCCAAGAAACCCAAAGGCCTGGAAATCTCTGCCCCCTCGTTGTTACTCTCAGGCACTGATATTGGCTCCATTGCCCTCAACAGCCCAGCACTTCCCTCAGGGTCTCTGACACCAGCCTTCTTCACTGCACAGCAGACGCCAGGCCTCGAGTGTAACCTGTCGATGCTGACCTGTGTTCTCCTGTCTTCACAGACGCCCACGGGGTTGTTATTAACTCCCAGTCCCTTATTGTCCAGCATTCACTTCTGGAGCAGCTTAAGCCCAGTGGCCCCTCTGAGTCCTGCCAGGCTGCAAGGACCCGGCTCCTTATTCCAGTTTCCCACGCTGTTAAACGGCCACATCCCCATGCAGATCCCCGGGCTGGACGGGTCCCCCTCTCCGCTGCTGCTGTCGCAGAGTCACAAGTCCTGACTTTCAGCCTCAGCACACCAGCaatgaagacttttttttttttatgtgaaaccCAAATCCGCTTTTGGTTTTTGCACACTGACGGTATACAGACACATACAagactttttcttcttttaaacatttattttttaaccatgaCAAGAAGCCCTTGCTGTTCGAGGTGTTTGACACTTCGCACCGATCTCCACTCCTAGGTGTGTTAAGGTTGCCAATGGAGGCTGTGAATCCGTGCCCTGTCCTTTGATGTTTGTCATGTATGCACTGTGCTTAAATGTTATTACCGGCTGTGCCTTCCCATGAGTAAGATGAAATGTAATGTCATACTatgtaaatgcattatttcctgctttaaaacaaaaaacaaacaaaaaaaaaaaaaaacttttaaagaCGAAATTCCAATATAAACAAAAGCTTTATAATagctttcaattatttttttcataaaggaATTGATAAAAATGTActcattaattttgtatttgtgcttttTAAGAGCCTAGAAAAGTATatgttgtttaaataaacatggaGCATTGAATGCTACACAACTGGAGTTCCCGTTTTgtacattaaacacaatatataaatatgtacacttGATATGTAAAtccaaaacattcaaaaacttTTAGGGGGAAGACACTGAAATATTCCTGGACTTTTCTTGACTCAAACAACCCCCGATTgtaagaagaaaaggaaaaaggctGTGAGGGGTAACTTCTCCTTCAGTCTAATGGATTTCAGTGTAACATCCAGTAACAGGGCGTGGCAGTCTATTTGATCCACACACTCAAACCCACTCACTCACCTTGAGTGTGGGCCTCCATATTCTCCTGCCGTCCGCAGATTCTAACCATCTGTCATGTGACACCGTCGCTAAAGTGGCCGGGCCTCATGCGAACCCCATGGCTCTGGTCAGACTCACCC

Function

GO: NA

KEGG:

id description
K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50982 lncRNA downstream 156248 14099946 ~ 14106270 (-) True G40903
TU50970 lncRNA downstream 275806 13985178 ~ 13986712 (-) True G40892
TU50934 lncRNA downstream 302698 13958804 ~ 13959820 (-) True G40860
TU50942 lncRNA downstream 377343 13883597 ~ 13885175 (-) True G40868
TU50850 lncRNA downstream 704339 13469305 ~ 13558179 (-) True G40798
TU51020 lncRNA upstream 15853 14296574 ~ 14296776 (-) True G40941
TU51053 lncRNA upstream 58193 14338914 ~ 14339228 (-) True G40966
TU51054 lncRNA upstream 58627 14339348 ~ 14339810 (-) True G40967
TU51055 lncRNA upstream 60182 14340903 ~ 14344472 (-) False AMCG00012931
TU51133 lncRNA upstream 227836 14508557 ~ 14510685 (-) True G41030
AMCG00012927 mRNA downstream 72431 14186362 ~ 14190087 (-) True AMCG00012927
AMCG00012924 mRNA downstream 81578 14175380 ~ 14180940 (-) True AMCG00012924
AMCG00012925 mRNA downstream 119169 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012919 mRNA downstream 286823 13973467 ~ 13975695 (-) True AMCG00012919
AMCG00012917 mRNA downstream 322941 13909671 ~ 13939577 (-) True AMCG00012917
AMCG00012932 mRNA upstream 45344 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012931 mRNA upstream 59695 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012938 mRNA upstream 144090 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012937 mRNA upstream 171694 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012944 mRNA upstream 394364 14675085 ~ 14702602 (-) True AMCG00012944
TU50830 other downstream 1147031 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2009075 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5149442 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 7806340 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12078355 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3599504 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3673342 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3895340 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3962029 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4696339 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile