RNA id: AMCG00012935


Basic Information

Item Value
RNA id AMCG00012935
length 4652
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00012935
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14405558 ~ 14419258 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGCAACCCCTGCGAAATAAGGGACCGCCCCCTCCCGGTGACGTCACGCCAGAAGTCCTGTCTCTGACGTCACCGGAGGACGCGCAGCGGCCGAGGAGCGCTCCACGCGACAGTCCGCGCGAGCAGACAAGATGGCGGCGGCTCGAGTGCCAGCGGAGTGAGTGGCGTGCGAGAGCTTGCCTTCTTAGCGATGGAGATCTGAATCCGAACAAGATGGACAAATGTAAGCACGTGGGCCGGCTGCGGCTGGCGCAGGACCACTCCATCCTGAACCCGCAGAAGTGGCACTGCGTGGACTGCAACACCACGGAGTCGGTGTGGGCCTGCCTGGGCTGCTCCCACGTGGCCTGCGGGCGCTACATCGAGGAGCATGCCCTCAAGCACTTCCAGGAGCGCAGGCACCCGGTGGCCATGGAGGTCAACGAGCTTTACGTGTTCTGCTACCTGTGCGATGACTATGTGCTGAATGACAATGCCACGGGGGACCTGCGGCTGCTGCGCGGCACGCTCGGTGCCATTAAGAGCCAAAACTACATGGTCACCACGCGCAGCGGCCGCACGCTCCGCTCCATGGCTGCCAGCGATGACATCACGGCCGGCAGCGTGCAGGAGCTTGTGAGGGACGAGGACCGCATGTTCACTGCGCTCTGGCACCGCCGCCGGGCCCTGATCGGCCGGGTGTTTCGCGCCTGGTTCGAGCTGACGGCGGGGGGGCGGCGGCGGGCGGTGGAGGACAGGTTGAGGGAGGAGGCGGAGGCAAGGAGGAGGGAGACGCAGGAGCGGAGGGAGGAGCTGAAGCGGCGGCGGAAGGAGGAGCTAGAGTGCACCCCACCCAGGAAGAGCCACCGCCTTCTGGAGCTGAACCAGAAGAGTCGTCCATCCAGGAAATCGTTGGCACCGGCACACAGAGGTCTCGGAAGGGGTTCGGACAGGAAGCAGACGCCtgggtcctggagagccacaacaGTGCAGAACAGGAAACTGGGGAAGGCATGCCGCCAGAGGTCACAACCCCCCACCTCAGCCAACACCCCTACCTCATCTGACGAAGTGCTAAAGCTCGGGGACTCACCGATCCGACGGAGGCCCACGGTCACTCCTGGCGTGACAGGGCTGCGTAACCTGGGCAACACCTGCTACATGAACTCCATCCTGCAGGTGCTCAGCCACCTGCACATCTTCCGCGAGTGCTTCCTGCAGCTCGACCTCAACCAGGCCCTCGAGCTCCTGGCCAGTGCCGTCAACGGTAACTCGCGGCCGCCCCTCTGCAAGTTGGTCATGGCCCACGGCAAGGCAGGGCAGCCTTCCTTTCCTTTGTCAAAGAGGGGCATGTCGGCCGGTCTGAGTGGGGGTGCCTCCAGGACCAGGAACATGGAGCTGATCCAGCCCAAAGAGCCCAGCTCAAATCACATCTCCCTGTGCCACGAGCTGCACACCCTGTTCCAGGTGATGTGGTCAGGGAAGTGGGCCCTGGTGTCTCCCTTCGCCATGCTGAACTCCGTCTGGCAGCTCATCCCCGCCTTCCGGGGCTATGCCCAGCAGGATGCCCAGGAGTTCCTTTGTGAGCTGCTGGACAAAGTGCAGAGAGAACTGGAGACAACAGGCACCCTGCAGCCTGCCCAAGTGCCGGCCCCCCAGCGGAAGCTCATCAAGAAGGTCCTGAATGTCGTAAACACCATCTTCCATGGGCAGCTCCTCAGCCAGGTCACCTGCCTCGCCTGCGACAATAAGTCCAACACCATCGAGCCGTTCTGGGACCTGTCCCTGGAATTTCCCGAGAGATACCACTGCAACGGAAAGGAAACCGCGGCACAGTTCCCTTGCCTGCTGACAGAAATGTTGGCCAAATTCACTGAGACCGAAGCCTTGGAAGGAAACATCTATGCCTGTGATCAGTGTAACAGCAAACGGAGGAGATTCTCGTCAAAGCCCATCATCCTCACAGAGGCTCAGAAGCAGCTCATGATTCACAAACTGCCTCAGGTCCTGAGACTGCATCTGAAACGCTTCAGgtggtCAGGCCGCAATCACAGAGAGAAGATCGGAGTTCACGTCAGCTTCGATCAGATACTAAATATGGAGCCTTACTGTTGTAGGGACTCCACAGGGTCACTTAAGCCAGACTGCTTCGTTTATGAATTGTCAGCCGTAGTGATGCATCATGGGAAGGGATTTGGTTCAGGACACTACACTGCCTATTGCTACAACACGGAAGGAGGGTTCTGGGTCCACTGCAATGACTCCAAGTTAAACATCTGCACTGTGGATGAGGTTTGTAAGACCCAGGCCTACATCCTGTTTTATACCCAGCGTGTTTCTCAGGACAAAGGGAAGTCTCTTTAGAAGAGAGTCGACACCAGCTTCAAACTGAAACAGATCAACTTCACCACCAAGCACCATGTCCACAGGCGGTCTCTGAACGTCTAAGATtgtggactttttttttcttcttcaattgtatcttttcatataaaatactgGATATAAAAGTGTTAAAGATAAATTGTGAATTTTATGTACATgatgtttataatgttttgtatgaaatttttaaacttttttttatatacaagtCATAGAGTGTACAgtaatttttaaagcaattaataCTGCATGTGGCAAAATCTTTTACCATTGAAAGTTCAAATCTCGGTCAGTTTAATGTCTTTTGTGCTGTCAGTATCATTCGAAACATTCATTTCACAATACAAGTTGGTAACGCATACGTAGAACATTTCTAGATACTTGCCTTACAGATAAACAATCTCAGCTACTGTGAACCTCCTGAAATACAAGGAGCAGGTATGtaggttattttttaatagccCTTACTTTTagaatgtaattgtttaaaaatatatatatactgtattggCTCCGTAACAGGAGGATTTTATACAGACAAAcgtttaatttttatattcattttttacattgtaCTACAGATACAATATTCTGTCAGAAGAATATGACTGAATCCTGCAGTGCAATAGCCACAGTTGTCCGTGTGAATGTtaagttgttatttttaaaccaaagtTTTGGGTATTTATAATGTGCTATAAAATGCCTGAGAGGTAGCTAATGCAAGTGTCTGAGTGTGTCCGAGTTACCGGTTTTGTTTCTGACAGCAGTGCCATTAGTGTCACTTCCCCATGTCTTCTAATTCATGATTTATGATTGCACAATGCAAATGTCTTGAATTTGatcattttggtttgttttttgatcaAATTGTAAATTGGTTGAAGGTCATAAACTTAATTGTAAACTTTCATAATTTCATACCAGATTTCTGAAAACCTTTACTTGGCAGATTGTTTCCTAGTattaaatgttgtgttttgtccTTTGTGTTCATTAAAAGTTCCACACACATTTGCACTTTAACACCGAGACAGTATCCTCCTTTGGTTTGGCAACCTAACTTAGGCCTTAGATCGAGGCTTTGTCCTACCTGTGAATCACAAAGTACAGAGCTGTACCATGTCAGGGTTTAAtggtcagaagccactttctagtAATTTGTAAAAACGCAGTTGTGTGCAGGGGTGTAATGTGCGATTTGAGGGTAGGTCAAGGTTtagatttggtctaggcctttgTCACAgtacagcagcagcaaacagTATTCCATGGACTGCTCTTAAGTGTTAAAACAGTAGACCGTGAATTGCCCTTTAGTTTTAAGTGCAAAAAGTGAAGGTAACCTGTCCTTATTGCAGCCTCTGATACTGGGAAGTGAGAAACCATGCGTCTTAAGTACTTTACAGTGTTACACTTCTGTGATTTTATGTTTCATTTGGGGGAGAATGGATCAAACCTGTGATCCTGCCATAGCCTGAGTCAGGGAAGAGGAGCATTGTGCCCAGTTAATGCCAGCTTTAAGTGGAGTAGATTCTCCCAGACTTACAGACATCCTGCTCTGTCGTAAGTACAGACACTGCCATCTCTATTTACtctatatcaaaataaaaagctttctCTTTGGGTGATTGCACTATAGGTGCTTATACACATCAAGGAATAATGTCCATACATGCCCAGTCTGTTTGGAATTCCTGcaggaaaatacaatacagagcCGGGTATCTTCGAGTGAATCTTGTGGGGAGGGTTCAGGTTGGTTCTGCCAGTCACTCGACGAAAGGTCACAGGCACAGGCGCTTGGTTTCTTTCGTACATCTGCAGATAGCTAGGAAGAGTCGAGCGCAGCATTGCGAAGATcgtttttgtttgaaaataaatacaaatcagtgtTTAGTATATGGTGTTTTTCTGATGTAAATTTATGGAAGCAATACTATGCAAATTGTTACCTCAATTTTTAGAGAAATTTACCTCAATAAAATGagaatatttttgcattttttttgtttttacttcatgCCTCACTTGTGTtctgtgtaatgtgtgtgttctTTCTCAATGTGTTTGTTGCATTGCTCTCAGCCAATCCAAAACACTGGAtgtcttatttatgttttctgtatacTCATTATAAatctttgtacattttttttaatagattgtaAAGAGGATTGACTAAATGGTTGTGATTGCACCTAAGATTGCTgctttattgttaaaaaaaaataaaaatcccaaaGTTTCAAAATTGAAATCCTGTttgggggagagaaaaaaat

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0016579 protein deubiquitination biological_process
GO:0051322 anaphase biological_process
GO:0090231 regulation of spindle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11834 USP44_49; ubiquitin carboxyl-terminal hydrolase 44/49

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51080 lncRNA upstream 7703 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 9659 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 61077 14340946 ~ 14344481 (+) True G40963
TU50999 lncRNA upstream 219422 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 417470 13986950 ~ 13988088 (+) True G40846
TU51159 lncRNA downstream 205994 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 209325 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 255807 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 270852 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 285702 14704960 ~ 14705185 (+) True G41084
AMCG00012934 mRNA upstream 10489 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012928 mRNA upstream 64656 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012930 mRNA upstream 80685 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012929 mRNA upstream 92329 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012926 mRNA upstream 146395 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012936 mRNA downstream 14545 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012939 mRNA downstream 59818 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012940 mRNA downstream 97525 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012942 mRNA downstream 155335 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012941 mRNA downstream 233586 14652844 ~ 14681647 (+) True AMCG00012941
TU50630 other upstream 1869629 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1915136 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3961111 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3961111 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3961111 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 9055 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 108904 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 213099 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 711537 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1057921 15477179 ~ 15479366 (+) True G41264

Expression Profile