RNA id: AMCG00012936


Basic Information

Item Value
RNA id AMCG00012936
length 2445
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00012936
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14433803 ~ 14451103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTAAACGAGTGGAAACTGGAGACACTTCAAACCCCGGGCCATTGTATTTCTTTGATCAGACTGCAGGTGATCGGACACACAGGAGGCGCATGAAGAAGCCGCTGGACGAGCTGCCGCCGGACCTCAGATACCTCAACATCAACCCGCGCCTGGCAGCTTTCATTAGGAGGGGCAAAAAGGTGGTATCCGACGTTGTGTCCGCAGACGATAATGCAGACGTTAAGaccaaagagaaagaaaaacagacggCTTTGCCAGAGCTCAGTACCGACCCTGGAGCTCTGGACAGCACTGACCCCGACCAGGCGCTGCTGGCCGTGCAGGGTGGACAGGGCTTGCCCGGGGAGGAAGAGGACATGAGCCCGGTTGAGGAGTATAAGTATATTGCGCCCCAGCTGCTGTCCGAGCTGGGGACGTGGCTGTGGGAGTGCTCCGGCCGGGGAGAGGGGAGCTTCCCCAGAGGACTCCTCAACGTCCTGAGCTACAGCTGGAGAGAGCTGGCGGAGGCGGCAGTGGACAGCCGGAGACAGGGGCACTCGCTGGCTTATAAGAGCACGAAACACGGCCAGCTCAAAGGCTCCGAGGCCTGCGAGAGTCAGTCTGACGAGACCCCCCCAGATAAAAGTCATCACGGAAAGATGAAAGCAAAGAAGAGAGTAGGCGCACCTGCCGAAAACGTGACTGGGAAGAGCTCGCAAGAGACCTGTGAAGATGAAGGTTGGATTGTCCAGCAAGAAGAGCCCAAACCCAATGACCCCGAGTGGACAGCGCTCTGCCAATGGGCTGTGGAGCGGCTCCAGCTTGCTCAAGTGCCAATCAACACTGTGGTTGTGGCATTTGACCAGAGAGGAGGAATGATGTGTGACAAGGAGGGCACTGTGAAACGACAGTGGAACTGGGTCCGGGGAGCCAAACTAGACGAACCAATTGTCATAGAGGTGACTGAGTTCATCACTGTGCGAATCATGAGCCCGTCCTCGGCCAGTCTGTCCTACAGGGCTCACGAGGAGAGCGTccagctgtctctctctcccctcggAAACGTCTCTCCTCCAAAGCACAGGGATCTGGGTTTGATCATGAGTGATGAAAAGTTCTCCTCTGACACAGCATGCCAACTCTCAAAAGCTAACAGGAAGAAAATGATAGAGATTGAGGCCAGGAGGAAATTCAAGGCAAAGATTTCGACAGCTACCAAATCAAGAAGTGAATTTCTGGAGATGGCAAAGACGCTGGAGACCCTGGAAGAGGAGTCTGGTTACCAGCGAGGGCTAAAAGCAGCGCAGGAACTGAAAAAGCTTCAGCGGAAGACCTCGCTGAAGCGTAAGACTCAGTCAGCTGTCTTGCCCACACTGGCTCCTATTTGTGCAGAGGAGAATGAGGCAGGGCCTGCACTGAGCAACGCTGAGAAGAGACCCTTGCGTCGCCTGACTGCGCCAGCACACAGCAGCCGGGCCAACTCTCCTGTGCGTAAGAgtgagaaggaggaggaacagCATCTCATCACGGAGGCAGGAGCGCTCAGGGTTCACAGCAACATCAGACTAGATCCAGAGAAGTGCAGACCACCGCTCACGTCCTTGACGTGCCCCTGTCCAGTGCTGCTGAGGAATGCAatgctgggggagggggacaaaaaaatgtgcaaatgcagCAACCACCAGATGCCGTCCCTGACAGACATGGAGTGCGATGCCTTCGTCCAAGGCCAGGCGCTCCACAGCCAGCAGGTCCTGGTGGTGTGTGTCACCTCCTCAGCAGGGCCGCAGAGCCAGTTCCGCATGGGTGTCCTGGAGGAGCTGTATGAGAAGATGAACAGAAACCGGAGCATGCCTTGTGCTCAGTGTCGTCAGGACACCTTCCGCCTGGTGAAGTATGACGTCTCTACCGCTGGCACACATGCCTCCCGCCGCACCCCCCTGCTGTTGCAACGACACAACGTGGCTCCCGGAATGTTCCTGGCCTTTATTTCTGTGTCATTTCAGATGTACATGAGTGGGAAGTTGTTGTTTGCCGATTACATCTTCAATGGGTACAGCTGCTCGGTAAAAGACCTTCAGAAACAGATCAGCAAAACTCGTGGAGACTACGGCAAGGGCCATTGTCTGCCCGTTGACTTCAGACTCagTCCCCAGAGGCAGACGCCCGAGACCGTTGACTCTCTTGCACCCCCAGGCCCGACTGCCAAAGCTAGGAAtggagaacagagagagagctgtcaGTCAAGAGCCACCTTACAGTCAGAAGAGTCTAAACTCCAGCCCAGCGGCAGAGCACAATCCGTTCAAGAGTACGTAACATTCAGCACGTCCAAGAGAAGCCACCTGCTCAGTGGCCAGAAGAGCCTCCCAGTCCCCTTTCCCTCCctgaacacagagagaggcTCGCAGACGTCTGGGCCTACCAGACTGCTGACCGGCTCCACCGGCCCCAGGCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51080 lncRNA upstream 35948 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 37904 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 89322 14340946 ~ 14344481 (+) True G40963
TU50999 lncRNA upstream 247667 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 445715 13986950 ~ 13988088 (+) True G40846
TU51159 lncRNA downstream 174149 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 177480 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 223962 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 239007 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 253857 14704960 ~ 14705185 (+) True G41084
AMCG00012935 mRNA upstream 14545 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012934 mRNA upstream 38734 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012928 mRNA upstream 92901 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012930 mRNA upstream 108930 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012929 mRNA upstream 120574 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012939 mRNA downstream 27973 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012940 mRNA downstream 65680 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012942 mRNA downstream 123490 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012941 mRNA downstream 201741 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012947 mRNA downstream 329462 14780565 ~ 14793388 (+) True AMCG00012947
TU51090 other upstream 602 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 1897874 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1943381 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3989356 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3989356 10436907 ~ 10444447 (+) False G40224
TU51114 other downstream 77059 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 181254 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 679692 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1026076 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 1169682 15620785 ~ 15630627 (+) False AMCG00012982

Expression Profile