RNA id: AMCG00012937


Basic Information

Item Value
RNA id AMCG00012937
length 4513
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00012937
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14452415 ~ 14474581 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTCTCCGCTGTTCCAATACTTACAGGATCTAGGACACACGGATTTCGAGACATGTCCAACTGTGTCGCAGGAGGAAGAGCAATGCGCTGGGGAGGAGGGCCCACTCCTACAGGATATCCCCACCACACCAAGAAAAGGCCTTTTCTTGAAATTGGCTGACGCCCTCCTGAGATGGAGCCCCTTCTCACAGAGCACCAAGTCCGACAGTCCAGAGCAGCAGCTGGATGTGGGATTTCGCCAGTACTCTCTGCATACCATCCTGGGGCAGGAagtgctgctgcaggaggaTGTGGAGCTGATTGAGCTGCTGGACCCCAGCATCCTCTCCACAGGATCCTCTGAGCATGCACACAGTGGCCCCGCGCCAGACCTGCGCTCCCTCGCTGTTCCCACTGTGTGGTACTGTTCCCCCAACGCCGCTGGGCTGCCGTGGATGGCCCTGGGCCCCTGGCTCCTGGCGTTCTCGGCATTCCTGCTGCTGCGGGGCCTGAGCCTCTGGAGGACAGCCCGGCTCCAGCGCACCATGAGGCTGTGCAGCAGGCAGCTGGAGGAGCTTGCAGCCAACAGCAGGGCCGTCACCAGCCTGGTCCGCAGGGCCCTGCGCCTGGTCCAAGAGACGGAGGTCATCTCCCGAGGCTTCACCCTGGTCAGTGCTGCCTATCCTTTTAACAAAGCGGGGCCCCACCGTAGCCAGCAGCTCCTGGGCCTCCGCAGGGCCGTGTACAGGTCCCTGCGCGCAACCTTCCGAGCCTGTCGCCTGGCCACCTGCCACATGCTGAACACCTATCCCCTGAACTCGGAGATCGACAACGCAACCAACTACGTGTCCACGGTGCCGCTGAAGGAGCTGGGCCTGGGTCTGAGTGAGGAGCAGCTGTCTGACGAACGGgcccaggagctcactgatgacTACAGCCTCCCGGCACTCAAGGTCCTTTTCCAGCTGTGGGTGGGCCAGAGCTCCGAGTTCTTCCGCCGGCTCGCCCTGCTGCTGTCCCCGGGGCAGGACCAGCAGGACTGGGGCCTGATGCACCAGGCCGTCTCCGAGGTGACGGGTCCACTCCACTGCACGCTGACCAGCTGCCTGGGGGACCTGCGGCGCAGCTACGACTTCCACCGCTACTTCGAGACGCAGCAGCAGCCCCCCGCTGGCCCTGAGCGCAGCCGCAAGGTCCGGCAGGAGCACCGGGAGCTGGGAAGCCTGTACACTGCCGTGCGCAGCCTGCAGCTGCACCTCAAAGCCCTGCTCAACGAGGTGATTATTCTGGAGGACGAGCTGGAGAAGCTGATGGTGTCAGACGGCCCTGCGGAGATGACGTGCGCAGGCTGCCAGGACCTGCAGGACAAGCTTAGACTCATCCAGCCACACATGCAGGCCAGCTCCAGCTGCTGGGAGGACGCTGTGACCCACGTGGACCGGATGCTGCGCCGAGCCACCAACTGCACAGGAAAGCCAGACTCTCCCGAAGAGGTCCAGCCTCCACTGATCCCCCCGCTGCCCACACCCATCACTCACATCGAGGACAGAGACCCCGTCCCCGAGGAGCAGGAGCTGGAAGCCTACGTGGAGGATTCAGACTCGGAAGCAGAGGGCCGGGGCAGTCTGTTTGACCTCCTGTCGCCGGAGGAGCGTGAGAggcagaagaaggagagagaggagtccAGGAGGGTCCTGCAGGAGCTCAAATCAGTGCTGGGGCTCCGCGCTTCAGAGGTGGAACGGCAAAAGTGGAAACAGCTTCTGTTCAGTGACCAAGCTGTCCTGAAGCCCATAGTGCCTGTGGAGGCTGCAGGACCTGACGATACCCCAGGCGCTGGTCTGGACACGGACTCGCCTGTGCAGGACAGCAGTCAGCACAACCACCTCGCTGAAGAGctgaggggagaggaggggggcgACAGCAGGGAGAGCCCAAGCCCCGCCCCCGCAGGGACTAAGACCGAGTATTCCTGTGGGCTGCCTGCGCAGGGAGACGTACTTCAGGATCAGCCGCACGAGGGGGTGGCACCCAGTAACCCAGGCGCAACTCTACACTACCAGTACGACGGCACGGAGGGGGAAGGCCAGACTGGTGCGGAGTCTGCAGATGCCATGTCCGGTCTAGCAGAGAGAGCCCCCCCCGTCTCTGTGAAAGAGAGGCTGACAGGACTGCACGGCACGGCAGCCTTGAGCTTCAGTTCCGCATTGGCAGCACAGGTGGCGGCCAAGTCCCACTCCTTCTCCAGCATGCAGGAGCAAACCTTCggagatgaggaggaggaggaggaagaggaagaagaagaactGTCAAGGGGAGATGAGGAGGAGTAAGGACATAGAGCTGCTATATTGAAAACTGTACAgcaggatatttattttaatactttcaatgttatttattgaaatactgCTTAAAGAAGaagatacttttttttgtttgtttgtgtaatttcaTTTAGTGGTTTTGGTGTGGTCTTATGCTTTTgtcttttagtcttttttttgtttgtttgtttttaatgataagGACTGTCATTAAGACTCATCAGACTACCAAACCAGCATTGTCTCGAAACACATTTAGTTCTCACTGTACTCAACACCCTTGAATATCGGTCAGCGGGAGCCTCTGGGCATGTCGTGACCATCTCTCCACTGACATGCATGCCAGTTCCCTCCCAGACCAGTTTCCTCATTTCAAAATCTCCACACAGGCTGAccgcagacagacagacagacagatcgACATGTGAGAAGGAAGTCAGTCTTCAAGCTGTGTATCAGCAGCAGTGTGCGCACAACTGAAAGCAAATAACCGTCCAGAAAATGTTTAAGGCCCGATATCGTGGCACTATGCTGGAGATGGAAATAGATGATTGTAGGAATAAATTATTCCTCTGTGTAACATTAGACAGCGCAGCGTCCAAGCACTGTGCTCCTCTAATGCTCGCCCCCTCCCTTGCACTCATTGGGTTAAATCACAGagtattcattttccttttctaagTTTGGAGAGCCAGGGAGGACCAAGTCTCTGAAGAGGAGACCTTTCCCTTGAACTCGTTCCCCCAGTGAATTCTGCCCACGTTGTTACTGACTGGCAGTCGCTGAAGCGAGGGGCGAAAAGCAGGGGACTGCTGCGCGTTTACCAATACAGAATTCTCAGGTACAGCTCTGGGACCAGTAAACTGAATGTAACACTACAAATTTAAAAGTCGCTAAACGGGTGAATGTGCTTTGAAGACCACGTCCAGGTACTGTTGGGCTGGTGCTGAACCACTGAGTTTTCTTACAAAACAGTTAAAATCCTGAATGTTTcataacatgaaaaaaaataattagacaaaTCTGCTGATATTATTTATCAGCTGTGGATCTGATTATGCACTGATATAATGTGAATCTTAGCATCACCTATGTCTGTCCTGAGATCATGagctgcatgtgtgtgtactgtatttggTACCAACCGTGCCAACCAAGCCATTAAAGCAAGTAGGAGGAAAGCACtggcttttttctttgtgttttaaaagagaaaaactaaCCGAAAAATCTAATTTGTATGCATTGACTATAGGAATATATATGAAGTTTCCTCAGCAACACGAGTCACACAATGCAGATGCTCCATTTTGAATGTACACACGGTGTGCCCAATTGTACATTTCCACCTCTCATGTTTAGCCAGAGCAGCCACACCGCATTTGAGAAGTGGTTCAGTGACCAGGCGTCGGTGGAGTTGCTGCTTCCAGAATATGATAGTCTCACTGGGGCcaaaatgttaaattcaataataaaataaaacaagactcaaaatgattaattatcaACACTGACGCTGACCCTGTACAGTGCGTGTTCATCAGTGGGGGCATCTTTAGGTTGTCATGGCAATCAATCCCAAAGCTTGCTAAATTAATCAAACTTagtaacaaacaaatgtaaacatactTCAGAAAACTACAGGACGACAGCTCTGGGATTAGGGTTGTCCGGGCGGAGGCAGGGAGTGACATTAATCCATTCGCTAAGATAAATGCAGGTTATTATTTCAATCACAACATTAAATGCAATTCCCCAGTTTAAATATCTGCTCATAAATGAATTTATTCTAATGCCGTGATGAAAGTGCTGACCAGTCTGGGCAAGTAATCCCCACTCCCGATTTCACGGATCTAAATGTAAATTTGTTTCAACGCACTTTTCAGTTGTTCATTACAATGTAGGAGGTAATAATACTGACCCCCAGTTCACGTAATTTTCAAACCACAGCTAGAGGAAATTCTCCTTCAGCTCAAGAGAATGGAAATGGACACAGCCAGGCTTGGCACTCCAGTGCCCATGAGGTAAACGCAGCCTGCGCTACACAAAGCCACTCATTCTGTTtgagtattttaaatacacaatgttgCACTACCATGCTTATCACCTACAGTGCTGCCTCTCTTCATCTGCAGGAGGTGCAGAGATGCAGCACTGGCACTGTGCTGGACTAAGATAAAGCTTTCCTCCTGGATATTGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51055 lncRNA downstream 107943 14340903 ~ 14344472 (-) False AMCG00012931
TU51054 lncRNA downstream 112605 14339348 ~ 14339810 (-) True G40967
TU51053 lncRNA downstream 113187 14338914 ~ 14339228 (-) True G40966
TU51020 lncRNA downstream 155639 14296574 ~ 14296776 (-) True G40941
TU50982 lncRNA downstream 346145 14099946 ~ 14106270 (-) True G40903
TU51133 lncRNA upstream 33976 14508557 ~ 14510685 (-) True G41030
TU51122 lncRNA upstream 53573 14528154 ~ 14529773 (-) True G41020
TU51152 lncRNA upstream 113264 14587845 ~ 14588126 (-) True G41047
TU51203 lncRNA upstream 242653 14717234 ~ 14717564 (-) True G41088
TU51218 lncRNA upstream 259154 14733735 ~ 14736629 (-) True G41102
AMCG00012938 mRNA downstream 19259 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012931 mRNA downstream 107983 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012932 mRNA downstream 120613 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012933 mRNA downstream 171694 14262518 ~ 14280721 (-) True AMCG00012933
AMCG00012927 mRNA downstream 262328 14186362 ~ 14190087 (-) True AMCG00012927
AMCG00012944 mRNA upstream 200504 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012943 mRNA upstream 283220 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012948 mRNA upstream 320461 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012955 mRNA upstream 577382 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012956 mRNA upstream 603517 15078098 ~ 15079375 (-) True AMCG00012956
TU50830 other downstream 1336928 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2198972 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5339339 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 7996237 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12268252 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3405644 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3479482 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3701480 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3768169 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4502479 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile